Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19c12
         (439 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0399 - 33632811-33633107,33633236-33633385,33633705-336340...    27   5.0  
09_01_0150 - 2244757-2245303,2252925-2253277                           27   6.6  

>03_06_0399 -
           33632811-33633107,33633236-33633385,33633705-33634029,
           33635315-33635982,33636967-33637212,33637405-33637545,
           33637807-33637856,33637943-33638060,33638304-33638910,
           33639339-33639463,33639813-33639869,33639952-33640023,
           33640100-33640232,33640305-33640428,33640522-33640576,
           33640672-33641322
          Length = 1272

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 227 ISRMFNDNCDLYEYNCDEKKQYRHVKMDVCKYE 325
           I+RMF D+ D YE++ DE+ +    +  + K E
Sbjct: 576 IARMFTDDNDTYEHSDDEEIEEHLARQRISKRE 608


>09_01_0150 - 2244757-2245303,2252925-2253277
          Length = 299

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 26  LGRVFIMYFRKLLTSLIITGLAAEVWCH 109
           +G +F++YF  L +  ++  +A E WCH
Sbjct: 170 VGFIFLVYFSVLCSFSVVVSVA-EPWCH 196


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,915,242
Number of Sequences: 37544
Number of extensions: 145176
Number of successful extensions: 329
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)