Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte19c10
(745 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 141 8e-35
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 135 7e-33
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 132 7e-32
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 131 1e-31
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 122 7e-29
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 120 3e-28
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 73 4e-14
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 65 9e-12
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 64 2e-11
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 62 6e-11
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 62 8e-11
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 60 3e-10
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 58 1e-09
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 57 2e-09
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 54 2e-08
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 53 4e-08
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 48 1e-06
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 44 2e-05
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy... 28 1.2
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c... 26 4.9
SPAC29B12.04 |snz1||pyridoxine biosynthesis protein|Schizosaccha... 25 8.6
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 141 bits (342), Expect = 8e-35
Identities = 73/146 (50%), Positives = 96/146 (65%), Gaps = 11/146 (7%)
Frame = +1
Query: 73 FDNYVGHITVDGEDVEMALWDTAGQEDYERLRPLSYTQTNCFLVCYSVGSRSSYENVVHK 252
F+NYV + VDG VE+ALWDTAGQEDY+RLRPLSY ++ L+C++V S S +NV K
Sbjct: 40 FENYVADVEVDGRHVELALWDTAGQEDYDRLRPLSYPDSHVILICFAVDSPDSLDNVQEK 99
Query: 253 WYPELKHFSASVPIVLVATKIDLRSSDKAV----------VTTQEGKKLKKKIRAAHLVE 402
W E+ HF +S+PI+LVA K DLR+ K + VTT+EG+ + +KI A +E
Sbjct: 100 WISEVLHFCSSLPILLVACKADLRNDPKIIEELSKTNQHPVTTEEGQAVAQKIGAYKYLE 159
Query: 403 CSALERINMDEVFEEAVRAA-LRKKP 477
CSA + EVFE A RAA L+ KP
Sbjct: 160 CSAKTNEGVREVFESATRAAMLKHKP 185
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 135 bits (326), Expect = 7e-33
Identities = 67/146 (45%), Positives = 96/146 (65%), Gaps = 11/146 (7%)
Frame = +1
Query: 73 FDNYVGHITVDGEDVEMALWDTAGQEDYERLRPLSYTQTNCFLVCYSVGSRSSYENVVHK 252
F+NYV + VDG +E+ALWDTAGQEDY+RLRPLSY ++ L+C+SV + S +NV K
Sbjct: 40 FENYVADVEVDGRHIELALWDTAGQEDYDRLRPLSYPDSHVVLICFSVDAPESLDNVQEK 99
Query: 253 WYPELKHFSASVPIVLVATKIDLRSSDKAV----------VTTQEGKKLKKKIRAAHLVE 402
W E+ HF +++PI+LV K+DLR+ K + +T +EG+ + +KI A +E
Sbjct: 100 WISEVLHFCSNLPILLVGCKVDLRNDPKTIEELSKTSQKPITFEEGQVVAQKIGAYKYLE 159
Query: 403 CSALERINMDEVFEEAVRAALRK-KP 477
CSA ++EVFE A RA++ K KP
Sbjct: 160 CSAKLNEGVNEVFETAARASMLKFKP 185
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 132 bits (318), Expect = 7e-32
Identities = 67/154 (43%), Positives = 95/154 (61%), Gaps = 10/154 (6%)
Frame = +1
Query: 73 FDNYVGHITVDGEDVEMALWDTAGQEDYERLRPLSYTQTNCFLVCYSVGSRSSYENVVHK 252
FDNY + + E + L+DTAGQEDY+RLRPLSY QT+ FLVC+SV S +S+ENV K
Sbjct: 37 FDNYAVTVMIGDEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVTSPASFENVKEK 96
Query: 253 WYPELKHFSASVPIVLVATKIDLRSSDKA----------VVTTQEGKKLKKKIRAAHLVE 402
W+PE+ H VP ++V T+IDLR +T ++G++L +++ A VE
Sbjct: 97 WFPEVHHHCPGVPCLIVGTQIDLRDDPSVQQKLARQHQHPLTHEQGERLARELGAVKYVE 156
Query: 403 CSALERINMDEVFEEAVRAALRKKPVHKRTCQYL 504
CSAL + + VF+EA+ AAL HK+ + L
Sbjct: 157 CSALTQKGLKNVFDEAIVAALDPPVPHKKKSKCL 190
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 131 bits (316), Expect = 1e-31
Identities = 63/141 (44%), Positives = 89/141 (63%), Gaps = 6/141 (4%)
Frame = +1
Query: 73 FDNYVGHITVDGEDVEMALWDTAGQEDYERLRPLSYTQTNCFLVCYSVGSRSSYENVVHK 252
F+NY+ I VDG +E++LWDTAGQE+Y++LR LSY+ T+ ++C++V SR S ENV+ K
Sbjct: 47 FENYIHDIFVDGNSIELSLWDTAGQEEYDQLRSLSYSDTHVIMICFAVDSRDSLENVITK 106
Query: 253 WYPELKHFSASVPIVLVATKIDLRSSDK------AVVTTQEGKKLKKKIRAAHLVECSAL 414
W PE+ V +VLVA K DLR +D+ ++ +EG KKI A +ECSA
Sbjct: 107 WLPEVSSNCPGVKLVLVALKCDLRGADEEQVDHSKIIDYEEGLAAAKKINAVRYLECSAK 166
Query: 415 ERINMDEVFEEAVRAALRKKP 477
++E F EA R AL +P
Sbjct: 167 LNRGVNEAFTEAARVALAAQP 187
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 122 bits (293), Expect = 7e-29
Identities = 66/157 (42%), Positives = 93/157 (59%), Gaps = 13/157 (8%)
Frame = +1
Query: 73 FDNYVGHITV--DGEDVEMALWDTAGQEDYERLRPLSYTQTNCFLVCYSVGSRSSYENVV 246
F+NY+ IT + + +E+ALWDTAGQE+Y+RLRPLSY +N L+C+S+ +S NV
Sbjct: 48 FENYITDITYGPNSKVIELALWDTAGQEEYDRLRPLSYPNSNVILLCFSIDCPASLNNVT 107
Query: 247 HKWYPELKHFSASVPIVLVATKIDLRSSDKAV----------VTTQEGKKLKKKIRAAHL 396
KWYPE++HF PIVLV K DLR A VT Q+ + + + A +
Sbjct: 108 EKWYPEVQHFCPRTPIVLVGLKADLRKDRNATEVLRTQGLTPVTYQQAQSVALSMNAPY- 166
Query: 397 VECSALERINMDEVFEEAVRAALRKK-PVHKRTCQYL 504
VECSA E ++EVF+ AV ++K K++C L
Sbjct: 167 VECSAKENTGVNEVFQLAVGLTIKKSFSFSKKSCVIL 203
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 120 bits (288), Expect = 3e-28
Identities = 62/141 (43%), Positives = 87/141 (61%), Gaps = 10/141 (7%)
Frame = +1
Query: 73 FDNYVGHITVDGEDVEMALWDTAGQEDYERLRPLSYTQTNCFLVCYSVGSRSSYENVVHK 252
F+NYV VDG+ V++ALWDTAGQE+YERLRP+SY + + LV +++ S S ENV K
Sbjct: 42 FENYVSDCRVDGKSVQLALWDTAGQEEYERLRPMSYAKAHIILVGFAIDSPDSLENVSTK 101
Query: 253 WYPELKHFSASVPIVLVATKIDLRSSDKAV----------VTTQEGKKLKKKIRAAHLVE 402
W E+ +VP +LV K DLRS A+ V +Q+ + + ++I A +E
Sbjct: 102 WIEEINTLCPNVPFILVGMKADLRSDPVAIEEMRRRNQNFVKSQQAELVAQRIGARKYME 161
Query: 403 CSALERINMDEVFEEAVRAAL 465
CS+L +D+VFE A RAAL
Sbjct: 162 CSSLTGDGVDDVFEAATRAAL 182
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 72.9 bits (171), Expect = 4e-14
Identities = 46/133 (34%), Positives = 73/133 (54%), Gaps = 2/133 (1%)
Frame = +1
Query: 76 DNYVGHITVDGEDVEMALWDTAGQEDYERLRPLSYTQTNCFLVCYSVGSRSSYENVVHKW 255
D+Y +DGE + + DTAGQE+Y +R FL+ Y++ SRSS++ + +
Sbjct: 43 DSYRKKCEIDGEGALLDVLDTAGQEEYSAMREQYMRTGEGFLLVYNITSRSSFDE-ISTF 101
Query: 256 YPELKHF--SASVPIVLVATKIDLRSSDKAVVTTQEGKKLKKKIRAAHLVECSALERINM 429
Y ++ + P+VLVA K DL + + VV+ EG++L K + + VE SA R+N+
Sbjct: 102 YQQILRVKDKDTFPVVLVANKCDLEA--ERVVSRAEGEQLAKSMHCLY-VETSAKLRLNV 158
Query: 430 DEVFEEAVRAALR 468
+E F VR R
Sbjct: 159 EEAFYSLVRTIRR 171
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 65.3 bits (152), Expect = 9e-12
Identities = 37/128 (28%), Positives = 67/128 (52%), Gaps = 1/128 (0%)
Frame = +1
Query: 94 ITVDGEDVEMALWDTAGQEDYERLRPLSYTQTNCFLVCYSVGSRSSYENVVHKWYPEL-K 270
I +DG+ +++ +WDTAGQE + + Y L+ Y V + S++N V W+ + +
Sbjct: 51 IELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDN-VRTWFSNVEQ 109
Query: 271 HFSASVPIVLVATKIDLRSSDKAVVTTQEGKKLKKKIRAAHLVECSALERINMDEVFEEA 450
H S +V +L+ K D D+ V+ ++G+ L ++ +E SA +N+DE F
Sbjct: 110 HASENVYKILIGNKCD--CEDQRQVSFEQGQALADEL-GVKFLEASAKTNVNVDEAFFTL 166
Query: 451 VRAALRKK 474
R ++K
Sbjct: 167 AREIKKQK 174
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 64.5 bits (150), Expect = 2e-11
Identities = 37/127 (29%), Positives = 67/127 (52%), Gaps = 1/127 (0%)
Frame = +1
Query: 91 HITVDGEDVEMALWDTAGQEDYERLRPLSYTQTNCFLVCYSVGSRSSYENVVHKWYPELK 270
+I +D + ++ +WDTAGQE Y + Y L+ Y + +SS++N V +W EL+
Sbjct: 51 NIVLDNKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDN-VGRWLKELR 109
Query: 271 -HFSASVPIVLVATKIDLRSSDKAVVTTQEGKKLKKKIRAAHLVECSALERINMDEVFEE 447
H +++ I+LV K DL V+T+E + + + +E SA++ N++E F+
Sbjct: 110 EHADSNIVIMLVGNKTDL--LHLRAVSTEEAQAFAAENNLS-FIETSAMDASNVEEAFQT 166
Query: 448 AVRAALR 468
+ R
Sbjct: 167 VLTEIFR 173
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 62.5 bits (145), Expect = 6e-11
Identities = 39/133 (29%), Positives = 70/133 (52%), Gaps = 6/133 (4%)
Frame = +1
Query: 94 ITVDGEDVEMALWDTAGQEDYERLRPLSYTQTNCFLVCYSVGSRSSYENVVHKWYPELKH 273
+ VD + V + LWDTAGQE ++ L Y +C ++ Y+V + S+++ V W E +
Sbjct: 50 VVVDDKLVTLQLWDTAGQERFQSLGMAFYRGADCCVIVYNVNNSKSFDS-VENWRQEFLY 108
Query: 274 FSA----SVPIVLVATKIDLRSSDKAVVTTQEGKKLKKKIRAAHLV--ECSALERINMDE 435
++ + P ++V +ID +S +AV + K K ++++ E SA E N+ +
Sbjct: 109 QTSQDECAFPFIIVGNQIDKDASKRAVSLHRALDYCKSK-HGSNMIHFEASAKENTNVTD 167
Query: 436 VFEEAVRAALRKK 474
+FE R AL +
Sbjct: 168 LFETVSRLALENE 180
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 62.1 bits (144), Expect = 8e-11
Identities = 40/136 (29%), Positives = 70/136 (51%), Gaps = 1/136 (0%)
Frame = +1
Query: 100 VDGEDVEMALWDTAGQEDYERLRPLSYTQTNCFLVCYSVGSRSSYENVVHKWYPELK-HF 276
++ V + LWDTAGQE + L P ++ ++ Y + + +S+ N KW +++
Sbjct: 55 LEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVN-TEKWIEDVRAER 113
Query: 277 SASVPIVLVATKIDLRSSDKAVVTTQEGKKLKKKIRAAHLVECSALERINMDEVFEEAVR 456
V IVLV K DL +DK VT +EG+K K+++ H+ E SA N+ +F + +
Sbjct: 114 GDDVIIVLVGNKTDL--ADKRQVTQEEGEKKAKELKIMHM-ETSAKAGHNVKLLFRKIAQ 170
Query: 457 AALRKKPVHKRTCQYL 504
+ V ++ Q +
Sbjct: 171 MLPGMENVETQSTQMI 186
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 60.1 bits (139), Expect = 3e-10
Identities = 33/93 (35%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Frame = +1
Query: 91 HITVDGEDVEMALWDTAGQEDYERLRPLSYTQTNCFLVCYSVGSRSSYENVVHKWYPELK 270
H + ++ +WDTAGQE LR Y Q C ++ + V SR +Y+NV H W+ +L
Sbjct: 50 HFHTNFGEICFNVWDTAGQEKLGGLRDGYYIQGQCGIIMFDVTSRITYKNVPH-WWRDLV 108
Query: 271 HFSASVPIVLVATKIDLRSSD-KAVVTTQEGKK 366
++PIVL K+D++ KA T KK
Sbjct: 109 RVCENIPIVLCGNKVDVKERKVKAKAITFHRKK 141
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 58.0 bits (134), Expect = 1e-09
Identities = 40/129 (31%), Positives = 61/129 (47%), Gaps = 5/129 (3%)
Frame = +1
Query: 94 ITVDGEDVEMALWDTAGQEDYERLRPLSYTQTNCFLVCYSVGSRSSYENVVHKWYPE-LK 270
+ VD + V + LWDTAGQE ++ L Y +C ++ Y V + S+E + W E L
Sbjct: 50 VLVDDKVVTLQLWDTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFE-TLDSWRDEFLI 108
Query: 271 HFSAS----VPIVLVATKIDLRSSDKAVVTTQEGKKLKKKIRAAHLVECSALERINMDEV 438
S S P +L+ K+D+ K +V+ + + E SA E IN+ E
Sbjct: 109 QASPSNPETFPFILLGNKVDV-EEQKRMVSKSKALAFCQARGEIPYFETSAKEAINVQEA 167
Query: 439 FEEAVRAAL 465
FE + AL
Sbjct: 168 FETVAKLAL 176
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 57.2 bits (132), Expect = 2e-09
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Frame = +1
Query: 103 DGEDVEMALWDTAGQEDYERLRPLSYTQTNCFLVCYSVGSRSSYENVVHKWYPEL-KHFS 279
+ V++ +WDTAGQE Y+ L P+ Y NC +V Y + +S E W EL +
Sbjct: 60 ENTSVKLEIWDTAGQERYKSLAPMYYRNANCAIVVYDITQAASLEK-AKSWIKELQRQAP 118
Query: 280 ASVPIVLVATKIDLRSSDKAV 342
+ I L K+DL +AV
Sbjct: 119 EGIVIALAGNKLDLAQERRAV 139
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 54.4 bits (125), Expect = 2e-08
Identities = 33/115 (28%), Positives = 58/115 (50%), Gaps = 1/115 (0%)
Frame = +1
Query: 100 VDGEDVEMALWDTAGQEDYERLRPLSYTQTNCFLVCYSVGSRSSYENVVHKWYPELKHFS 279
++G+ V++ +WDTAGQE + + Y + ++ Y V + S+ N V +W E+ ++
Sbjct: 52 LEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNN-VKQWLQEIDRYA 110
Query: 280 A-SVPIVLVATKIDLRSSDKAVVTTQEGKKLKKKIRAAHLVECSALERINMDEVF 441
V +LV K D+ DK VV K+ + L E SA + N+++ F
Sbjct: 111 VEGVNRLLVGNKSDM--VDKKVVEYSVAKEFADSLNIPFL-ETSAKDSTNVEQAF 162
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 53.2 bits (122), Expect = 4e-08
Identities = 39/119 (32%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Frame = +1
Query: 91 HITVDGEDVEMALWDTAGQEDYERLRPLSYTQTNCFLVCYSVGSRSSYENVVHKWYPELK 270
+I G++ + DTAGQ++Y L + +++ YS+ S+SS+E V L
Sbjct: 46 NIKYKGQEFATEIIDTAGQDEYSILNSKHSIGIHGYVLVYSITSKSSFEMVKIVRDKILN 105
Query: 271 HFSAS-VPIVLVATKIDLRSSDKAVVTTQEGKKLKKKIRAAHLVECSALERINMDEVFE 444
H VPIV+V K DL + VT +EGK L + + A E SA N+ FE
Sbjct: 106 HTGTEWVPIVVVGNKSDLHM--QRAVTAEEGKALANEWKCA-WTEASARHNENVARAFE 161
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 48.0 bits (109), Expect = 1e-06
Identities = 32/122 (26%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
Frame = +1
Query: 115 VEMALWDTAGQEDYERLRPLSYTQTNCFLVCYSVGSRSSYENVVHKWYPELKHFSAS-VP 291
+++ +WDTAGQE + + Y ++ Y V ++ S+E + W +++ + S +
Sbjct: 62 IKLQIWDTAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEE-LSSWLSDIRAMAPSTIC 120
Query: 292 IVLVATKIDLRSSDKAVVTTQEGKKL--KKKIRAAHLVECSALERINMDEVFEEAVRAAL 465
+VL +K DL++ + V+T+E + +K I +AH E S+ N++E F V +
Sbjct: 121 VVLAGSKSDLQNQRQ--VSTEEAAEFCSEKHISSAH--ETSSYTGSNVEECFLSVVSTII 176
Query: 466 RK 471
+
Sbjct: 177 TR 178
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 44.4 bits (100), Expect = 2e-05
Identities = 34/113 (30%), Positives = 49/113 (43%), Gaps = 2/113 (1%)
Frame = +1
Query: 109 EDVEMALWDTAGQEDYERLRPLSYTQTNCFLVCYSVGSRSSYENVVHKWYPELKHFSASV 288
+DV + L DT Q D L+ ++C SYE V W P + +V
Sbjct: 49 DDVSLVLVDT--QSDSNEREYLAAEIKKANVICLVYSDNYSYERVSIFWLPYFRSLGVNV 106
Query: 289 PIVLVATKI-DLRSSDKAVVTTQEGKKLKKKIRAAH-LVECSALERINMDEVF 441
PIVL K DL + E L + + + CSALE+IN++E+F
Sbjct: 107 PIVLCENKSEDLDNYQGLHTIEHEMIPLINEFKEIEACILCSALEKINVNELF 159
>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 28.3 bits (60), Expect = 1.2
Identities = 21/62 (33%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
Frame = -1
Query: 571 VKFFHFYVTNNKIFNRVAF----FF--IKDIGRCVCGLVSCGGPRAPLPRILRPCLSALV 410
+ F H V FN F FF I + RC+ C P+ PLP LR L
Sbjct: 359 LNFSHKSVMGRSTFNMPNFPEPKFFEDIPNTERCILSAFICSPPQLPLPNPLRMYLPCPS 418
Query: 409 LN 404
LN
Sbjct: 419 LN 420
>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
2|||Manual
Length = 279
Score = 26.2 bits (55), Expect = 4.9
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -1
Query: 133 PITPFLRPLHPR*CGRHNCQITICSFSKFPI 41
P T F R H R CG+ C SF+K P+
Sbjct: 39 PFTWFRRRHHCRWCGKLFCYNCCNSFAKLPV 69
>SPAC29B12.04 |snz1||pyridoxine biosynthesis
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 296
Score = 25.4 bits (53), Expect = 8.6
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 376 KIRAAHLVECSALERINMDEVFEEAV 453
K+R H VE LE I +D + E V
Sbjct: 83 KVRIGHFVEAQILESIGVDYIDESEV 108
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,917,548
Number of Sequences: 5004
Number of extensions: 58016
Number of successful extensions: 170
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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