Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte19c08
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 32 0.083
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 32 0.083
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 31 0.11
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 31 0.14
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 30 0.25
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 29 0.58
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 28 1.0
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 27 1.8
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 27 2.3
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 2.3
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 26 4.1
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 26 5.4
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre... 26 5.4
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi... 26 5.4
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p... 26 5.4
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.4
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3... 26 5.4
SPCC1259.06 |||transcription factor TFIID complex subunit 8 |Sch... 25 7.2
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 25 7.2
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 7.2
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 25 7.2
SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|... 25 7.2
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch... 25 9.5
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 25 9.5
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 9.5
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|... 25 9.5
>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 368
Score = 31.9 bits (69), Expect = 0.083
Identities = 21/54 (38%), Positives = 28/54 (51%)
Frame = -1
Query: 517 STPLERARPRPTPPLVSWSATPASATNTPSLATARLPHSIATVARTASLEPTAS 356
STP ++ P PP + +ATP +A N S A A P S T + +S PT S
Sbjct: 268 STPTDQTLRPPNPPAANGNATPVTAVNNVS-AVADSPQS--TGSSVSSSLPTLS 318
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 31.9 bits (69), Expect = 0.083
Identities = 21/79 (26%), Positives = 35/79 (44%)
Frame = -1
Query: 571 DCKRSARATPETVLAVAVSTPLERARPRPTPPLVSWSATPASATNTPSLATARLPHSIAT 392
D S+ T ET + S+ P + SWS++ +T + AT SIAT
Sbjct: 921 DSATSSSWTAETSSSAITSSVAASVTPTSSSSASSWSSSSEVDPSTAASATGSSTSSIAT 980
Query: 391 VARTASLEPTASAATAPDN 335
+ + S + + A+A D+
Sbjct: 981 ASVSGSSTSSVATASATDS 999
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 31.5 bits (68), Expect = 0.11
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Frame = -1
Query: 523 AVSTPLERARPRPTPPLVSWSATPASATNTPSLATARLPHSIATVARTASLEP-TASAAT 347
+ STP A P P PP ++ P PS A + TVA A P T + +
Sbjct: 78 STSTPKSAASPAPNPP----ASVPEKKVEAPSSTVAESTSTTQTVAAAAPSNPDTTATSE 133
Query: 346 AP 341
AP
Sbjct: 134 AP 135
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 31.1 bits (67), Expect = 0.14
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = -1
Query: 574 FDCKRSARATPETVLAVAVSTPLERARPRPTPPLVSWSATPASATNTPSLA 422
F R + A P TV + + P A RPTPP V S++ A + +A
Sbjct: 336 FTANRFSPAAPTTVSSERNAPPYPSAPTRPTPPTVQTSSSAAPVDSAEPVA 386
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 30.3 bits (65), Expect = 0.25
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Frame = -1
Query: 547 TPETVLAVAVSTPLERARPRPTPPLVSWSATPASA--TNTPSLATARLPHSIATVARTAS 374
T E V A ++ PRPT + + +PA+ TN PS + T +AS
Sbjct: 213 TEEPVAAKPEASSTATKGPRPTTSASNTNTSPANGAPTNKPSTDINTTDPATQTTQVSAS 272
Query: 373 LEPTASAATAPDN 335
P S ++ P N
Sbjct: 273 NSPALSGSSTPSN 285
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 29.1 bits (62), Expect = 0.58
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = -1
Query: 454 PASATNTPSLATARLPHSIATVARTASLEPTASAATAPDNGP 329
PAS ++TP + TA AT A A + +A AA PD P
Sbjct: 105 PASTSSTPKVETAAAAAPAATPA-PAPAQTSAPAAALPDEPP 145
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 28.3 bits (60), Expect = 1.0
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = -1
Query: 487 PTPPLVSWSATPASATNTPSLATARLPHSIATVARTASLEPTASAATAPDNG 332
P+P + TP SAT P+ +A H+ T + TA+A +G
Sbjct: 567 PSPGSATTKPTPGSATTKPTPVSATEEHAAGTTKPAPAAGATATAENETADG 618
Score = 26.2 bits (55), Expect = 4.1
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -1
Query: 499 ARPRPTPPLVSWSATPASATNTPSLATARLPHSIATVARTASLEPT-ASAATAPD 338
A +PTP + TP SAT + T + P A TA E A TA D
Sbjct: 572 ATTKPTPGSATTKPTPVSATEEHAAGTTK-PAPAAGATATAENETADGKAQTATD 625
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 27.5 bits (58), Expect = 1.8
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -1
Query: 541 ETVLAVAVSTPLERARPR-PTPPLVSWSATPASATNTPSLATARLPHSIATVARTA 377
+T ++ A P E + P P SATPA+ TPS AT+ S A A A
Sbjct: 320 KTNVSAAYEKPAELSSSSVPFPHKSQDSATPANVETTPSTATSAPKKSTAPFAINA 375
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 27.1 bits (57), Expect = 2.3
Identities = 20/59 (33%), Positives = 27/59 (45%)
Frame = -1
Query: 523 AVSTPLERARPRPTPPLVSWSATPASATNTPSLATARLPHSIATVARTASLEPTASAAT 347
A STP P PP+ S S TP + PSL P ++ + SL+ T S+ T
Sbjct: 408 AYSTPARPTESPPPPPISSSSTTP-RPDDKPSLP----PRGLSEDNDSLSLQKTGSSDT 461
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.1 bits (57), Expect = 2.3
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Frame = -1
Query: 559 SARATP-----ETVLAVAVSTPLERARPRPTPPLVSWSATPASATNTPSLATAR---LPH 404
SA +TP T A STPL + S S+TP S+ N+ + +A L
Sbjct: 302 SASSTPLTSVNSTTTTSASSTPLSSVSSANSTTATSTSSTPLSSVNSTTATSASSTPLTS 361
Query: 403 SIATVARTASLEPTAS 356
+T A +AS P S
Sbjct: 362 VNSTTATSASSTPLTS 377
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = -1
Query: 526 VAVSTPLERARPRPTPPLVS--WSATPASATNTPSL 425
V+V++PL+ P+PPL S SA+P+ + SL
Sbjct: 321 VSVTSPLQSCTNSPSPPLSSPASSASPSESLRNESL 356
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -1
Query: 529 AVAVSTPLERARPRPTPPLVSWSATPASATNTPSLATA 416
A + S+ L +RP PTPP S S++P ++ T T+
Sbjct: 244 ATSSSSRLYPSRPAPTPP-ASSSSSPLLSSQTVKTTTS 280
>SPBC19C2.09 |sre1||sterol regulatory element binding protein
Sre1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 900
Score = 25.8 bits (54), Expect = 5.4
Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 1/115 (0%)
Frame = -1
Query: 478 PLVSWS-ATPASATNTPSLATARLPHSIATVARTASLEPTASAATAPDNGP*YKRL*RL* 302
P VS S A+PA T T + ++ P+S+ + S P AS+ A + P + L
Sbjct: 6 PSVSVSVASPAMETPTKASPDSKSPNSVGAI---PSSSPLASSTKASTSTPFVENCSNL- 61
Query: 301 GFFCMAISHISSNNTSYQSQACNPNSFVCQSQNYNRLNHHWLTFCTFCVSVDILP 137
C S + + + + + +P+SF + N WL F +++ P
Sbjct: 62 --LCDLASIVEDSPPTLTNTSLSPHSFSLSDMESSMSN--WLNPFAFDNTMNSAP 112
>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 749
Score = 25.8 bits (54), Expect = 5.4
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Frame = -1
Query: 460 ATPASATN-----TPSLATARLPHSIATVARTASLEPTASAATAP 341
ATP S + TPS + + P I + ART S++P T P
Sbjct: 683 ATPTSGLSNFNSVTPSSSASLYPPLIPSEARTPSVQPANRRVTTP 727
>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 752
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 409 PHSIATVARTASLEPTASAATAP 341
P SI T+A S EPT+S AP
Sbjct: 606 PTSIKTIAAEESSEPTSSVDVAP 628
>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 5.4
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -1
Query: 202 YNRLNHHWLTFCTFCVSVDILPL 134
YN LN+HW T V ++P+
Sbjct: 504 YNNLNYHWATSLLAFVGCGLVPI 526
>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 378
Score = 25.8 bits (54), Expect = 5.4
Identities = 16/65 (24%), Positives = 25/65 (38%)
Frame = -1
Query: 541 ETVLAVAVSTPLERARPRPTPPLVSWSATPASATNTPSLATARLPHSIATVARTASLEPT 362
E+ A + + P A+P P P + A + +T P A I+ A + T
Sbjct: 312 ESHKATSDAVPPAEAKPEPVPASAAERAPTSESTTVPETIVASTTKVISEPAPRVTTAAT 371
Query: 361 ASAAT 347
A T
Sbjct: 372 ADIVT 376
>SPCC1259.06 |||transcription factor TFIID complex subunit 8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 222
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 430 KECSLQKQESQTTIPVAVSVAVWL 501
+E +L Q S+ TIP VA+WL
Sbjct: 38 RELALHTQLSKHTIPTTKDVALWL 61
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1465
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/57 (21%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Frame = +1
Query: 451 QESQTTIPVAVSVAVWLVQAVSTL-----RPQVPSQASLALIACSRSFCAVLCTLCD 606
++S +P+A + WL++ V++L P + + L+ FC+++C + +
Sbjct: 90 EQSTLRVPMASLLIFWLLKVVTSLLILLFSPYIAITSMARLLTLITLFCSLVCFISE 146
>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/28 (32%), Positives = 20/28 (71%)
Frame = -1
Query: 472 VSWSATPASATNTPSLATARLPHSIATV 389
+SW+++ ++ATNT S +++ S+ +V
Sbjct: 162 ISWNSSTSAATNTSSSSSSSSQSSVVSV 189
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -1
Query: 502 RARPRPTPPLVSWSATPASATNTPSLATARLPHSIATVA 386
+A P P PP+ A P SA T +L A P ++
Sbjct: 1879 QAAPPPPPPMALPKAGPPSAAPTSALPPAGPPAGATAIS 1917
>SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Frame = -1
Query: 466 WSATPASATNTPSLATARLPHSIATVARTASLEPTASA--ATAP 341
W TP S NTP L S+ +A S +S AT+P
Sbjct: 140 WIGTPDSIPNTPELPVKTTLDSVNEIAAALSTHAESSPMDATSP 183
>SPAP8A3.14c |||mitochondrial inner membrane protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 677
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = +3
Query: 507 SGVDTATASTVSGVARADRLQSKFLCCPVYFVRLEKCLTNCGCL 638
SG +T G D ++ K L + F +KCL + CL
Sbjct: 267 SGKAQIKITTAFGNCSFDEIERKLLSFVMLFENTDKCLIDSECL 310
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 25.0 bits (52), Expect = 9.5
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Frame = -1
Query: 547 TPETVLAVAVSTPLERARPRPTP----PLVSW--SATPASATNTPSLATARLPHSIATVA 386
T T + + TP+ A PT +VS + TP A TP++ T LP T A
Sbjct: 213 TTTTPMVETMITPMVEAMTTPTEVVGRSMVSTIRTTTPMEAMITPTVETTTLP----TAA 268
Query: 385 RTASLEPTAS 356
T +E T +
Sbjct: 269 MTTPVEETTT 278
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/44 (20%), Positives = 25/44 (56%)
Frame = -1
Query: 478 PLVSWSATPASATNTPSLATARLPHSIATVARTASLEPTASAAT 347
P+++ S + S+ +T +++ LP + + + S+ PT +++
Sbjct: 86 PIITESTSSTSSASTTGSSSSPLPSTSTSCTTSTSIPPTGGSSS 129
>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
1|||Manual
Length = 809
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -1
Query: 634 HPQFVKHFSSRTKYTGQHRNFDCKRSARATPETV 533
HP K +++ K G + DC R AR P T+
Sbjct: 274 HPTPGKFDAAKAKSLGITKGLDCGRLARGEPVTL 307
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,459,028
Number of Sequences: 5004
Number of extensions: 45731
Number of successful extensions: 195
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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