Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19c08
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              23   1.9  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   3.4  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    23   3.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.4  

>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 120 IYRVYNGKMSTETQNVQN 173
           I  VYNG ++ E +NVQ+
Sbjct: 44  IDEVYNGNVNVEDENVQS 61


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 30  ILIQCYFQNKILTNLFC 80
           ++I CY++  +L  LFC
Sbjct: 109 MVINCYYETWVLGPLFC 125


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 30  ILIQCYFQNKILTNLFC 80
           ++I CY++  +L  LFC
Sbjct: 75  MVINCYYETWVLGPLFC 91


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -1

Query: 463 SATPASATNTPSLATARLPHSIATVARTASLEPTASAATA 344
           ++TPA+ T T   AT  LP + AT   T    P+A  AT+
Sbjct: 213 ASTPATVTTTG--ATTTLPAASAT--GTGPATPSAVVATS 248


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,533
Number of Sequences: 438
Number of extensions: 2988
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)