Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19c07
         (498 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces pombe...    28   0.68 
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    27   1.6  
SPCC330.08 |alg11|gmd3|alpha-1,2-mannosyltransferase Alg11|Schiz...    25   6.3  
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce...    25   8.4  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    25   8.4  
SPAC222.04c |ies6||chromatin remodeling complex subunit Ies6 |Sc...    25   8.4  

>SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 548

 Score = 28.3 bits (60), Expect = 0.68
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -3

Query: 427 SWQNKFLVESSQWVAIPIPEVAFEKLFFCC*ISFGDIWRAV 305
           SW N   ++ ++W+++ +P +   K+FF     F D W+ V
Sbjct: 437 SWSNG--IDYAKWISVALPSMLSNKVFFKAFKDF-DAWKVV 474


>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 204 NSKNLKHTLDVLLARRPFNNDK 269
           NS+ ++H LD +  + PFNN +
Sbjct: 46  NSQKIRHILDEIYEKTPFNNTR 67


>SPCC330.08 |alg11|gmd3|alpha-1,2-mannosyltransferase
           Alg11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 471

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 72  GILAYVAAYLVQFSNCPYGPKFEL 1
           G++ Y+AA L+   N   GPKF++
Sbjct: 376 GVVEYMAAGLIPVVNNSGGPKFDI 399


>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 563

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 436 TTASWQNKFLVESSQWV 386
           T  S+Q  FLV SS+W+
Sbjct: 296 TDVSFQGAFLVSSSEWI 312


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 322 DIWRAVQIPPLLAEPVVHLSLLKGLRANKT 233
           +++R +Q P    + +VH  L K  ++NKT
Sbjct: 721 NVYRLIQKPEAYLKRIVHEKLCKPNKSNKT 750


>SPAC222.04c |ies6||chromatin remodeling complex subunit Ies6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +3

Query: 225 TLDVLLARRPFNNDKWTTGSARRGGI*TALQMSPKEI*QQKNSFSN 362
           +LD+ L  RPF N  +     R   +   +Q  P +    K S+S+
Sbjct: 9   SLDISLLARPFRNPNYKAQPRRNRNLRQIIQNDPVQNEPSKFSYSS 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,862,888
Number of Sequences: 5004
Number of extensions: 34860
Number of successful extensions: 90
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)