Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19c07
         (498 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0161 + 32093701-32094302,32094413-32094689                       29   2.7  
08_02_1201 - 25243516-25243681,25243784-25243892,25244046-252441...    28   4.8  

>03_06_0161 + 32093701-32094302,32094413-32094689
          Length = 292

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -3

Query: 235 TSNVCFRFFEFPYVMRELCL*QIDCSYFILVHIILVLN 122
           T  VC   F+  Y +R +C    D  +FIL+ +I++++
Sbjct: 200 TRTVCSANFDVGYSLRSVCNKDKDSIHFILLFVIVIIS 237


>08_02_1201 -
           25243516-25243681,25243784-25243892,25244046-25244148,
           25244273-25244304,25244405-25244625,25244948-25245063,
           25245149-25245404,25245916-25246003,25246133-25246210,
           25246541-25246659,25246893-25246942,25247117-25247245
          Length = 488

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -3

Query: 463 RRTSFKPKYTTASWQNKFLVESSQWVAIPIPEVAFEKLFF 344
           R +  KP Y T +W N+    +     +PI   AF K+FF
Sbjct: 335 RPSKLKPAYATDNWVNQTAYRN----GVPIGPPAFTKIFF 370


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,473,719
Number of Sequences: 37544
Number of extensions: 201976
Number of successful extensions: 365
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)