Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19c06
         (556 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyce...    28   0.80 
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    27   2.5  
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom...    25   5.7  
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch...    25   5.7  
SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyc...    25   7.5  
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa...    25   9.9  
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    25   9.9  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    25   9.9  
SPCC645.02 |||conserved protein |Schizosaccharomyces pombe|chr 3...    25   9.9  

>SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 456

 Score = 28.3 bits (60), Expect = 0.80
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = -2

Query: 120 YNCISRSVCLDFVHFNVDCWCNFN---VRAWYDRM 25
           +NC   S   DF  FN+  WC ++   V  +YDR+
Sbjct: 209 FNCGDESERADFYAFNMYEWCGYSSMTVSGYYDRI 243


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 189 FLGVYLIISKLFWTFWSLYGH 251
           F+G +L+   +FW  W+ Y H
Sbjct: 420 FIGCFLLPISMFWFAWTCYPH 440


>SPAC6F6.12 |||autophagy associated protein
           Atg24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 464 KKLAKHFTKIINHPITEQSPSIQRYLKN 547
           K L ++ T+   HP+  QSP    +L+N
Sbjct: 107 KLLNRYITRCALHPVLHQSPHFIAFLEN 134


>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 487

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +2

Query: 404 DITKNISELTVLSFRKLDDVKKLAKHFTKIINHPITEQSPSIQ 532
           +++ + S   VLS R  D +     H  ++ N  IT Q P  Q
Sbjct: 193 EMSNHCSPKIVLSLRPQDKIPDFITHVLELKNKKITYQGPKEQ 235


>SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 329

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = +3

Query: 192 LGVYLIISKLFWTFWSLYGHSTSDSSTLKHNTSGGAD*ILALPRKSQNSQQISF 353
           L   L+ S+ FWTF+SL   S+ D ++   +T       + L  KSQ ++ IS+
Sbjct: 152 LNEVLLNSRDFWTFFSLIQASSFDMASDAFSTFKS----ILLNHKSQVAEFISY 201


>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
           Brl2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 680

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 532 LNAWTLFCYRMIDDLSKVFCQLFDVIKLPKR 440
           LN   L   +++D+L     QL  +IKLP R
Sbjct: 161 LNTINLDIDKILDELDTTRSQLHSIIKLPDR 191


>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1188

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 402 RTSQRTYLS*PCYRFGSLMTSKSWQNTLL 488
           +T  + + S P Y  GS    K W+N +L
Sbjct: 716 KTRTKVFTSNPIYNAGSEKFVKDWRNAML 744


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 461  VKKLAKHFTKIINHPITEQSPSIQRYLKNLQ 553
            + +L  +FTKI++  + E   ++  Y K LQ
Sbjct: 1145 LSQLCSYFTKIVDGTVIENDKTLDFYEKPLQ 1175


>SPCC645.02 |||conserved protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 188

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +2

Query: 413 KNISELT-VLSFRKLDDVKKLAKHFTKIINHPITEQS 520
           KN+  L+  +  RKLD   +LA HF +  N P+   S
Sbjct: 88  KNVILLSNSIGTRKLDPTGELAAHFQQKWNIPVVRHS 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,083,162
Number of Sequences: 5004
Number of extensions: 38894
Number of successful extensions: 150
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)