Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte19c06
(556 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF177386-1|AAD51369.1| 3584|Drosophila melanogaster huntingtin h... 32 0.60
AF147779-1|AAF03256.1| 3583|Drosophila melanogaster Huntington d... 32 0.60
AF146362-1|AAF03255.1| 3583|Drosophila melanogaster Huntington d... 32 0.60
AE014297-4258|AAF56808.1| 3583|Drosophila melanogaster CG9995-PA... 32 0.60
BT016038-1|AAV36923.1| 855|Drosophila melanogaster RE01051p pro... 30 1.8
AE013599-1349|AAF58616.2| 855|Drosophila melanogaster CG8271-PA... 30 1.8
X67219-1|CAA47659.1| 597|Drosophila melanogaster Rop protein. 30 2.4
X67218-1|CAA47658.1| 597|Drosophila melanogaster Rop protein. 30 2.4
U15967-2|AAB60242.1| 597|Drosophila melanogaster Rop protein. 30 2.4
AY052094-1|AAK93518.1| 597|Drosophila melanogaster SD04216p pro... 30 2.4
AE014296-773|AAF47844.1| 597|Drosophila melanogaster CG15811-PA... 30 2.4
>AF177386-1|AAD51369.1| 3584|Drosophila melanogaster huntingtin
homolog protein.
Length = 3584
Score = 31.9 bits (69), Expect = 0.60
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 288 SGGAD*ILALPRKSQNSQQISFILTATINFALKWPRTLR 404
+G A ILA+P + ++ Q +L AT+N L+ PR R
Sbjct: 2689 AGAAKQILAMPTRQESEQDALGVLLATVNTLLQQPRVWR 2727
>AF147779-1|AAF03256.1| 3583|Drosophila melanogaster Huntington
disease protein homolog protein.
Length = 3583
Score = 31.9 bits (69), Expect = 0.60
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 288 SGGAD*ILALPRKSQNSQQISFILTATINFALKWPRTLR 404
+G A ILA+P + ++ Q +L AT+N L+ PR R
Sbjct: 2688 AGAAKQILAMPTRQESEQDALGVLLATVNTLLQQPRVWR 2726
>AF146362-1|AAF03255.1| 3583|Drosophila melanogaster Huntington
disease protein homolog protein.
Length = 3583
Score = 31.9 bits (69), Expect = 0.60
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 288 SGGAD*ILALPRKSQNSQQISFILTATINFALKWPRTLR 404
+G A ILA+P + ++ Q +L AT+N L+ PR R
Sbjct: 2688 AGAAKQILAMPTRQESEQDALGVLLATVNTLLQQPRVWR 2726
>AE014297-4258|AAF56808.1| 3583|Drosophila melanogaster CG9995-PA
protein.
Length = 3583
Score = 31.9 bits (69), Expect = 0.60
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 288 SGGAD*ILALPRKSQNSQQISFILTATINFALKWPRTLR 404
+G A ILA+P + ++ Q +L AT+N L+ PR R
Sbjct: 2688 AGAAKQILAMPTRQESEQDALGVLLATVNTLLQQPRVWR 2726
>BT016038-1|AAV36923.1| 855|Drosophila melanogaster RE01051p
protein.
Length = 855
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -1
Query: 343 CCEFCD-FLGSAKIQSAPPLVLCLRVELSDVECPYKL 236
CCE + +L + +Q +++CL V L V CPY L
Sbjct: 640 CCERIEMYLDISLLQDPSFILMCLSVTLMSVGCPYML 676
>AE013599-1349|AAF58616.2| 855|Drosophila melanogaster CG8271-PA
protein.
Length = 855
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -1
Query: 343 CCEFCD-FLGSAKIQSAPPLVLCLRVELSDVECPYKL 236
CCE + +L + +Q +++CL V L V CPY L
Sbjct: 640 CCERIEMYLDISLLQDPSFILMCLSVTLMSVGCPYML 676
>X67219-1|CAA47659.1| 597|Drosophila melanogaster Rop protein.
Length = 597
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/40 (27%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Frame = -1
Query: 319 GSAKIQSAPPLVLCL--RVELSDVECPYKLQNVQNNFEII 206
G A++++ P L++ + V +S++ C Y++ N N+E++
Sbjct: 535 GQAQVKNVPRLIVFIVGGVSMSEMRCAYEVTNAVRNWEVL 574
>X67218-1|CAA47658.1| 597|Drosophila melanogaster Rop protein.
Length = 597
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/40 (27%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Frame = -1
Query: 319 GSAKIQSAPPLVLCL--RVELSDVECPYKLQNVQNNFEII 206
G A++++ P L++ + V +S++ C Y++ N N+E++
Sbjct: 535 GQAQVKNVPRLIVFIVGGVSMSEMRCAYEVTNAVRNWEVL 574
>U15967-2|AAB60242.1| 597|Drosophila melanogaster Rop protein.
Length = 597
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/40 (27%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Frame = -1
Query: 319 GSAKIQSAPPLVLCL--RVELSDVECPYKLQNVQNNFEII 206
G A++++ P L++ + V +S++ C Y++ N N+E++
Sbjct: 535 GQAQVKNVPRLIVFIVGGVSMSEMRCAYEVTNAVRNWEVL 574
>AY052094-1|AAK93518.1| 597|Drosophila melanogaster SD04216p
protein.
Length = 597
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/40 (27%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Frame = -1
Query: 319 GSAKIQSAPPLVLCL--RVELSDVECPYKLQNVQNNFEII 206
G A++++ P L++ + V +S++ C Y++ N N+E++
Sbjct: 535 GQAQVKNVPRLIVFIVGGVSMSEMRCAYEVTNAVRNWEVL 574
>AE014296-773|AAF47844.1| 597|Drosophila melanogaster CG15811-PA
protein.
Length = 597
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/40 (27%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Frame = -1
Query: 319 GSAKIQSAPPLVLCL--RVELSDVECPYKLQNVQNNFEII 206
G A++++ P L++ + V +S++ C Y++ N N+E++
Sbjct: 535 GQAQVKNVPRLIVFIVGGVSMSEMRCAYEVTNAVRNWEVL 574
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,081,640
Number of Sequences: 53049
Number of extensions: 400081
Number of successful extensions: 1449
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1449
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2131214097
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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