Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19c05
         (465 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0016 - 22167780-22167873,22167978-22168272,22168380-221684...    28   4.3  
02_05_0974 - 33218817-33219634,33220733-33221012                       28   4.3  
04_01_0532 - 6938763-6941177                                           27   5.6  
07_03_1520 + 27415266-27415507,27415608-27415722,27415761-274158...    27   7.4  
05_05_0325 + 24109469-24109665,24110284-24110400,24110497-241109...    27   9.8  
03_01_0591 - 4366400-4366558,4366782-4366985,4367078-4367152,436...    27   9.8  
02_05_0499 - 29534462-29535315,29535871-29537221                       27   9.8  

>04_04_0016 -
           22167780-22167873,22167978-22168272,22168380-22168455,
           22168665-22168853,22168955-22169176,22169315-22169413,
           22169502-22169582,22169753-22170060,22171611-22171950,
           22172047-22172110,22172191-22172412,22172865-22173043
          Length = 722

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -1

Query: 192 DIRC*RGACYRDIVLHMFHCNLDNHVYQHFHSKGH 88
           D+ C +     D+ +H F    D H Y+  H K H
Sbjct: 96  DLECVQLVFLADVAVHFFLAYRDPHTYRMVHDKRH 130


>02_05_0974 - 33218817-33219634,33220733-33221012
          Length = 365

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 13/41 (31%), Positives = 28/41 (68%), Gaps = 5/41 (12%)
 Frame = +1

Query: 265 DVTAISPSSFIQALDFASYLK-----IVPNLILNNSIAIPD 372
           D+T+I+P S I  +D ++++K     +VP ++ N+++ +PD
Sbjct: 278 DITSIAPISTIAEVDESAFIKSSTNPMVPPVMENSAVDLPD 318


>04_01_0532 - 6938763-6941177
          Length = 804

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 374 LSGIAMELFNIKLGTIFK*EAKSRAWMKDEGEIAVTSRP 258
           LS  + +  NI LGT    +  + AW+   G+ A   RP
Sbjct: 16  LSSPSAQAQNISLGTSLTTQGPNNAWLSPSGDFAFGFRP 54


>07_03_1520 +
           27415266-27415507,27415608-27415722,27415761-27415815,
           27415862-27417849,27418161-27418589
          Length = 942

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +1

Query: 313 ASYLKIVPNLILNNSIAIPDK*QWNLPRVSEVFGL 417
           A+ L +VP L L  SI  PD+    LPR+ E F L
Sbjct: 165 AAILLLVPCLFLETSIPHPDR----LPRLKEYFAL 195


>05_05_0325 +
           24109469-24109665,24110284-24110400,24110497-24110914,
           24110997-24111416
          Length = 383

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = -2

Query: 374 LSGIAMELFNIKLGTIFK*EAKSRAWMKDEGEIAVTSRPAANYS*RNRDWFITS 213
           ++G  + +    L T++K      AW +  G     +  AA  +   RDWF+ S
Sbjct: 120 IAGTLVTVAGAMLMTLYKGPLMEMAWSRHAGAGVAEAPAAAAAAISGRDWFLGS 173


>03_01_0591 -
           4366400-4366558,4366782-4366985,4367078-4367152,
           4367240-4367394,4367476-4367596,4367720-4367794,
           4369435-4369572,4369655-4369765,4369844-4369948,
           4370327-4370405,4370561-4370622,4370698-4370763,
           4370840-4371024,4371095-4371173
          Length = 537

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 60  LIILMMHGISALYYGNVGKRG 122
           L ++ +H +S  YYG  GKRG
Sbjct: 330 LQLVSLHSVSKGYYGECGKRG 350


>02_05_0499 - 29534462-29535315,29535871-29537221
          Length = 734

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 15/72 (20%), Positives = 33/72 (45%)
 Frame = +3

Query: 42  VMNFLMLIILMMHGISALYYGNVGKRGCLSYNGTCVEQCPDNMHRVNSECRATPSQRTCD 221
           V+N  + +  ++ G +A Y+G     G  +Y   CV      + R++     T ++    
Sbjct: 260 VLNASLDLSTILLGKTA-YFGFSASTGAATYQLNCVRMWNMTVERLHDGTTTTATKLAGT 318

Query: 222 EPVSISLGIICG 257
               +++G++CG
Sbjct: 319 SGWKLAVGVLCG 330


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,661,866
Number of Sequences: 37544
Number of extensions: 262946
Number of successful extensions: 578
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)