Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19c05
         (465 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79756-10|CAL36507.1|   80|Caenorhabditis elegans Hypothetical p...    32   0.18 
AL032634-1|CAC35856.2| 1195|Caenorhabditis elegans Hypothetical ...    29   1.2  
Z77659-8|CAB01170.1|  958|Caenorhabditis elegans Hypothetical pr...    28   2.9  
Z77657-11|CAB01153.1|  958|Caenorhabditis elegans Hypothetical p...    28   2.9  
AF295093-1|AAG03081.1|  958|Caenorhabditis elegans bimC kinesin ...    28   2.9  
AB024428-1|BAC19818.1|  958|Caenorhabditis elegans kinesin like ...    28   2.9  
U58750-12|AAB00652.2|  266|Caenorhabditis elegans Hypothetical p...    28   3.8  
U40028-9|AAA81120.1|  256|Caenorhabditis elegans Serpentine rece...    28   3.8  
U46753-7|AAA85763.2|  223|Caenorhabditis elegans Hypothetical pr...    27   5.0  
U37548-4|AAA79200.2|  373|Caenorhabditis elegans Hypothetical pr...    27   5.0  
AF003145-6|AAK68678.1| 1420|Caenorhabditis elegans Mtk1/mekk4 ho...    27   5.0  
AF003145-5|AAB57718.1| 1418|Caenorhabditis elegans Mtk1/mekk4 ho...    27   5.0  
U41031-2|AAA82619.2|  615|Caenorhabditis elegans Hypothetical pr...    27   6.6  
U97404-2|AAB93309.1|  795|Caenorhabditis elegans Acid-sensing/am...    27   8.8  
AL117207-8|CAB60399.1|  362|Caenorhabditis elegans Hypothetical ...    27   8.8  
AL023821-1|CAA19438.2|  355|Caenorhabditis elegans Hypothetical ...    27   8.8  
AC024751-9|AAK21508.2|  677|Caenorhabditis elegans Pif1p dna hel...    27   8.8  
AB015041-1|BAA28677.1|  677|Caenorhabditis elegans PIF1 protein.       27   8.8  

>Z79756-10|CAL36507.1|   80|Caenorhabditis elegans Hypothetical
           protein F53C11.9 protein.
          Length = 80

 Score = 32.3 bits (70), Expect = 0.18
 Identities = 18/61 (29%), Positives = 33/61 (54%)
 Frame = +3

Query: 153 QCPDNMHRVNSECRATPSQRTCDEPVSISLGIICGWSRCDCDFPLVLHPSSGFCFLLEDC 332
           QC +N   + ++C  +P  RTC+ P  + + + C  +RC+C    V+  ++  C  L+ C
Sbjct: 22  QCGEN--EIFNDC-GSPCDRTCENPNPMCIQM-CK-ARCECKQGFVVDSNTKKCIDLKKC 76

Query: 333 P 335
           P
Sbjct: 77  P 77


>AL032634-1|CAC35856.2| 1195|Caenorhabditis elegans Hypothetical
            protein Y39G8C.1 protein.
          Length = 1195

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = -2

Query: 443  IYFTQGKWYNPKTSDTR-GKFHCHLSGI-AMELFNIKLGTIF 324
            +Y+T+  W N KT + R G+    L G+ ++E   +K GT++
Sbjct: 1089 VYYTEDIWSNEKTREKRFGELSEFLGGLPSLEAEQLKCGTVY 1130


>Z77659-8|CAB01170.1|  958|Caenorhabditis elegans Hypothetical
           protein F23B12.8 protein.
          Length = 958

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = -3

Query: 358 WNCSILN*GQSSSRKQNPELG*RTRGKSQSHRDQPQIIPKEIETGSSQVLCDGVARHSL 182
           +NC++   GQ+ + K     G RT  KS +      IIP+ +E    Q+   G   +SL
Sbjct: 84  FNCTVFAYGQTGTGKTFTMEGGRTDAKSSTDDPTTGIIPRAVEDIFEQLERCGCEEYSL 142


>Z77657-11|CAB01153.1|  958|Caenorhabditis elegans Hypothetical
           protein F23B12.8 protein.
          Length = 958

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = -3

Query: 358 WNCSILN*GQSSSRKQNPELG*RTRGKSQSHRDQPQIIPKEIETGSSQVLCDGVARHSL 182
           +NC++   GQ+ + K     G RT  KS +      IIP+ +E    Q+   G   +SL
Sbjct: 84  FNCTVFAYGQTGTGKTFTMEGGRTDAKSSTDDPTTGIIPRAVEDIFEQLERCGCEEYSL 142


>AF295093-1|AAG03081.1|  958|Caenorhabditis elegans bimC kinesin
           BMK-1 protein.
          Length = 958

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = -3

Query: 358 WNCSILN*GQSSSRKQNPELG*RTRGKSQSHRDQPQIIPKEIETGSSQVLCDGVARHSL 182
           +NC++   GQ+ + K     G RT  KS +      IIP+ +E    Q+   G   +SL
Sbjct: 84  FNCTVFAYGQTGTGKTFTMEGGRTDAKSSTDDPTTGIIPRAVEDIFEQLERCGCEEYSL 142


>AB024428-1|BAC19818.1|  958|Caenorhabditis elegans kinesin like
           protein KLP-14 protein.
          Length = 958

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = -3

Query: 358 WNCSILN*GQSSSRKQNPELG*RTRGKSQSHRDQPQIIPKEIETGSSQVLCDGVARHSL 182
           +NC++   GQ+ + K     G RT  KS +      IIP+ +E    Q+   G   +SL
Sbjct: 84  FNCTVFAYGQTGTGKTFTMEGGRTDAKSSTDDPTTGIIPRAVEDIFEQLERCGCEEYSL 142


>U58750-12|AAB00652.2|  266|Caenorhabditis elegans Hypothetical
           protein F55G1.12 protein.
          Length = 266

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 8/75 (10%)
 Frame = +3

Query: 84  ISALYY-GNVGKRGCLS------YNGTCVEQCPDNMHRV-NSECRATPSQRTCDEPVSIS 239
           + + YY G+    GCL        NG C   C D  + + N     + SQ+TC + +  S
Sbjct: 90  VKSYYYDGDYTTDGCLRSCYQDVVNGDC--GCMDPRYPMPNDGISCSISQKTCIDELVDS 147

Query: 240 LGIICGWSRCDCDFP 284
            G    W  C C  P
Sbjct: 148 RGDPSTWPECTCPLP 162


>U40028-9|AAA81120.1|  256|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 39 protein.
          Length = 256

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
 Frame = +3

Query: 156 CPDNMHRVNSECRATPSQRT--CDEPVSISLGIICGWSRC 269
           CP   + +   C   P   T  C   +S  +G+IC + RC
Sbjct: 199 CPVGQYCIGGICVQNPMSTTFACHNLISCPMGMICQFGRC 238


>U46753-7|AAA85763.2|  223|Caenorhabditis elegans Hypothetical
           protein C34F11.8 protein.
          Length = 223

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 180 NSECRATPSQRTCDEPVSI 236
           N  CRA P   TCD P S+
Sbjct: 33  NELCRAHPEMSTCDRPYSV 51


>U37548-4|AAA79200.2|  373|Caenorhabditis elegans Hypothetical
           protein C54D2.1 protein.
          Length = 373

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/50 (24%), Positives = 21/50 (42%)
 Frame = +3

Query: 165 NMHRVNSECRATPSQRTCDEPVSISLGIICGWSRCDCDFPLVLHPSSGFC 314
           ++HR   +    P   +C+E ++ +   +C    C C      HPS   C
Sbjct: 20  SVHRAKRQFGVVPLYSSCNEYLTCAAPAVCAAGTCQC--AQAYHPSGTQC 67


>AF003145-6|AAK68678.1| 1420|Caenorhabditis elegans Mtk1/mekk4
           homolog protein 1, isoformb protein.
          Length = 1420

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 18/52 (34%), Positives = 23/52 (44%)
 Frame = -1

Query: 336 RDNLQVGSKIQSLDEGRGGNRSHIATSRKLFLKK*RLVHHKSFVMESRDIRC 181
           + NL V S   +LDE  G +RS +      FLKK      K   M  R + C
Sbjct: 148 QQNLSVESLSDALDELEGADRSKLHMEITQFLKKADGEKSKQIQMSQRLMNC 199


>AF003145-5|AAB57718.1| 1418|Caenorhabditis elegans Mtk1/mekk4
           homolog protein 1, isoforma protein.
          Length = 1418

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 18/52 (34%), Positives = 23/52 (44%)
 Frame = -1

Query: 336 RDNLQVGSKIQSLDEGRGGNRSHIATSRKLFLKK*RLVHHKSFVMESRDIRC 181
           + NL V S   +LDE  G +RS +      FLKK      K   M  R + C
Sbjct: 148 QQNLSVESLSDALDELEGADRSKLHMEITQFLKKADGEKSKQIQMSQRLMNC 199


>U41031-2|AAA82619.2|  615|Caenorhabditis elegans Hypothetical
           protein C16B8.2 protein.
          Length = 615

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +3

Query: 126 LSYNGTCV--EQCPDNMHRVNSECRATPSQ 209
           L + G C   EQCPDN+  ++ +C + P +
Sbjct: 221 LEWPGVCDKNEQCPDNLVCIHGDCWSIPDK 250


>U97404-2|AAB93309.1|  795|Caenorhabditis elegans
           Acid-sensing/amiloride-sensitiveion channel family
           protein 1 protein.
          Length = 795

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 14/56 (25%), Positives = 27/56 (48%)
 Frame = +3

Query: 108 VGKRGCLSYNGTCVEQCPDNMHRVNSECRATPSQRTCDEPVSISLGIICGWSRCDC 275
           +  + C+ ++G C  Q   N   V    R TP ++  +  +S   G++  +S C+C
Sbjct: 317 IDSKTCICHHGNCF-QIKGN---VKKRKRRTPERKVHERLLSRYEGLLAVYSHCNC 368


>AL117207-8|CAB60399.1|  362|Caenorhabditis elegans Hypothetical
           protein Y60A3A.14 protein.
          Length = 362

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 339 FNIEQFHRYSG*MTMEFTS-SIRGFWIIPFSLCKINVFFFKK 461
           FN  Q  R+S   +  F   +I  ++++PF+ C   +F+F K
Sbjct: 154 FNFVQIFRFSAENSTGFWHHTISLYFLLPFTACTAILFYFNK 195


>AL023821-1|CAA19438.2|  355|Caenorhabditis elegans Hypothetical
           protein Y102A5B.2 protein.
          Length = 355

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 446 YIYFTQGKWYNPKTSDTRGKFHC 378
           ++Y T G WY  + + T GKF C
Sbjct: 326 WVYITDGAWYTERCT-TPGKFLC 347


>AC024751-9|AAK21508.2|  677|Caenorhabditis elegans Pif1p dna
           helicase (yeast) homologprotein 1 protein.
          Length = 677

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
 Frame = -3

Query: 352 CSILN*GQSSSRKQNP---ELG*RTRGKSQSHRDQPQIIPKEIETGSSQVLCDGVARHSL 182
           CS+     SS +K+ P   +    T G++   +   QI  K   TG   V+C  V    +
Sbjct: 28  CSLRIESTSSIKKKTPISSKSAIMTVGRNAQRKIHLQIELKTTATGQPAVVCYDVTDAVV 87

Query: 181 LTRCMLSGHCSTHVP 137
             + + +G C+  +P
Sbjct: 88  HLQSVANGKCTVEIP 102


>AB015041-1|BAA28677.1|  677|Caenorhabditis elegans PIF1 protein.
          Length = 677

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
 Frame = -3

Query: 352 CSILN*GQSSSRKQNP---ELG*RTRGKSQSHRDQPQIIPKEIETGSSQVLCDGVARHSL 182
           CS+     SS +K+ P   +    T G++   +   QI  K   TG   V+C  V    +
Sbjct: 28  CSLRIESTSSIKKKTPISSKSAIMTVGRNAQRKIHLQIELKTTATGQPAVVCYDVTDAVV 87

Query: 181 LTRCMLSGHCSTHVP 137
             + + +G C+  +P
Sbjct: 88  HLQSVANGKCTVEIP 102


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,234,791
Number of Sequences: 27780
Number of extensions: 239916
Number of successful extensions: 627
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)