Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte19c02
(675 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26 |Schizosac... 28 1.1
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 28 1.4
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom... 27 2.5
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc... 26 4.3
SPCC1259.09c |||pyruvate dehydrogenase protein x component|Schiz... 26 5.7
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 26 5.7
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom... 26 5.7
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 5.7
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB... 26 5.7
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 25 10.0
>SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 305
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/46 (28%), Positives = 28/46 (60%)
Frame = +3
Query: 150 DTSHEERAHRRLQIIYARKTKERQVFMQELKEIRQKNDKRMLKKVR 287
+T + + RR+ ++ ARK +R++ +E + RQK ++ + +VR
Sbjct: 154 ETVYRDATGRRIDLVLARKEAKRKLKEKEEEARRQKEQQQGVVQVR 199
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 27.9 bits (59), Expect = 1.4
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = +3
Query: 432 PRPNIINLMNCVYLGRNDPKEMLAQLFLMTYGHPIDGKRAVYNLNARLMLSG-ILYLGLD 608
P+PNI+ C YL R+ P +L + + HP V + + + +L D
Sbjct: 989 PQPNILRYGVCGYLSRSIPVISACELVVNNFLHPQSSLYCVLDSDISAGKNNRVLKFVYD 1048
Query: 609 NLIQLLREKI 638
NL L +I
Sbjct: 1049 NLASCLAHEI 1058
>SPCC663.10 |||methyltransferase, DUF1613 family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 502
Score = 27.1 bits (57), Expect = 2.5
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 509 IPYDLRPSYRWETSCLQSECPAHVVW 586
+PYDL+ SY+W++ C A V+
Sbjct: 22 VPYDLQSSYQWQSILEHDTCYAAEVF 47
>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 849
Score = 26.2 bits (55), Expect = 4.3
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Frame = +3
Query: 108 PNTVERMVHQNYGPDTSHEERA--HRRLQIIYARKTKERQVFMQELKEIRQKNDKRMLKK 281
P V+ ++ +T +E A HR I+ + +++++F+++ E +K K
Sbjct: 70 PGPVQISEGNDHTVETKIDEAAVVHRSSSIVIS--PEDQEIFLKKATEYYRK------KN 121
Query: 282 VRDSIGPIWYQVLSVPQ-RSALDTLEFSI 365
+ I P+W +V VPQ +S+ T+ S+
Sbjct: 122 IEADIVPVWGKVQRVPQAKSSSATITPSV 150
>SPCC1259.09c |||pyruvate dehydrogenase protein x
component|Schizosaccharomyces pombe|chr 3|||Manual
Length = 456
Score = 25.8 bits (54), Expect = 5.7
Identities = 14/63 (22%), Positives = 30/63 (47%)
Frame = +3
Query: 207 TKERQVFMQELKEIRQKNDKRMLKKVRDSIGPIWYQVLSVPQRSALDTLEFSIYQDILEG 386
T ER + +++LK + K ++ + + + + LS+ + S ++ D+L G
Sbjct: 266 TFERSISLEKLKSLLAKRKEKDAFGIDEVVSAMIGDALSISELSKVEPNSIESAYDLLLG 325
Query: 387 RPI 395
PI
Sbjct: 326 API 328
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 25.8 bits (54), Expect = 5.7
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +3
Query: 222 VFMQELKEIRQKNDKRMLKKV 284
+F+Q+L ++R + RMLKK+
Sbjct: 455 IFLQKLLQLRNTRELRMLKKI 475
>SPBC1778.02 |rap1||telomere binding protein
Rap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 693
Score = 25.8 bits (54), Expect = 5.7
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 407 SHERARFIPTSKHYKLNELCIFRAE*SKRDASTTIPYDLRPSYRWETSCLQS 562
S E+ +FI + H NE+ I R+ + R+ I LR + E L++
Sbjct: 621 SEEKGKFINLAMHELQNEVSILRSSVNHREVDEAIDNILRYTNSTEQQFLEA 672
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 25.8 bits (54), Expect = 5.7
Identities = 9/37 (24%), Positives = 25/37 (67%)
Frame = +3
Query: 165 ERAHRRLQIIYARKTKERQVFMQELKEIRQKNDKRML 275
E +++ + + ++ KE+++ MQ++KE + +KR++
Sbjct: 382 EELNQKKRELAQQQLKEQELLMQKIKETDRSGNKRLM 418
>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 588
Score = 25.8 bits (54), Expect = 5.7
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = -2
Query: 269 TLVILLSYFFKLLHEYLSFLSFPCVDDLEPPVGAFLMTC 153
+ ++L + KLL + F + +DD+EPP C
Sbjct: 381 SFIVLFMTWLKLLIPWRLFRLWSLIDDIEPPENIVRCMC 419
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.0 bits (52), Expect = 10.0
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +3
Query: 120 ERMVHQNYGPDTSHEERAHRRLQIIYARKTKERQVFMQELKEIRQKNDKRMLKK 281
E+ V Q Y + + +A +I K K+ + ELK+IR+K KR KK
Sbjct: 553 EQRVLQAYREKVAQQRQAKLLEEIEEENKRKQER----ELKKIREKEKKRDKKK 602
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,687,955
Number of Sequences: 5004
Number of extensions: 52983
Number of successful extensions: 129
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -