Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19c02
         (675 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0556 + 30207124-30207581,30207692-30207901,30208016-302081...    29   4.5  
08_01_0780 - 7563080-7563148,7563593-7563728,7564601-7564698,756...    28   7.8  

>01_06_0556 +
           30207124-30207581,30207692-30207901,30208016-30208100,
           30208517-30208676,30208768-30208844,30208985-30209032,
           30209504-30209594,30209703-30210004,30210214-30210495,
           30210695-30211011,30211113-30211273,30211556-30211665,
           30211752-30211902,30212438-30212578,30212688-30212857,
           30213485-30213817,30213981-30214271,30214356-30214439,
           30214620-30214753,30214946-30215173,30215273-30215444,
           30215621-30215875,30215963-30216232
          Length = 1509

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/55 (27%), Positives = 31/55 (56%)
 Frame = +3

Query: 171 AHRRLQIIYARKTKERQVFMQELKEIRQKNDKRMLKKVRDSIGPIWYQVLSVPQR 335
           AHR + +    +  +RQ F++ +  + +++++R LKK+R  I     Q+ +V  R
Sbjct: 111 AHREVDV-RTLELAQRQAFVERVFHVAEEDNERFLKKLRARIDRAGIQMPTVEVR 164


>08_01_0780 -
           7563080-7563148,7563593-7563728,7564601-7564698,
           7565189-7565303,7565469-7565621,7565858-7565943,
           7566537-7567114,7567190-7567307,7567921-7567953
          Length = 461

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -2

Query: 263 VILLSYFFKLLHEYLSFLSFPCVDDLEPPVGAFLMTCVRSIVLMYHS 123
           + LL YF +     L F  +  ++++     AFL+  V  I+L YHS
Sbjct: 351 LFLLMYFNQSKVAMLKFTGYKLLNNISDSGKAFLIILVSDILLGYHS 397


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,646,516
Number of Sequences: 37544
Number of extensions: 313357
Number of successful extensions: 765
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)