Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19c02
         (675 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29082-4|AAT92084.1|  279|Caenorhabditis elegans Troponin t prot...    38   0.005
U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t prot...    38   0.005
U29082-2|AAT92082.1|  350|Caenorhabditis elegans Troponin t prot...    38   0.005
U44759-1|AAA86906.1|  405|Caenorhabditis elegans troponin T prot...    32   0.32 
U43282-4|AAA83615.1|  405|Caenorhabditis elegans Muscle position...    32   0.32 
U23523-10|AAP68941.1|  428|Caenorhabditis elegans Troponin t pro...    32   0.32 
AL021497-3|CAA16405.1|  613|Caenorhabditis elegans Hypothetical ...    31   0.75 
AF039716-9|AAB96734.2|  548|Caenorhabditis elegans Hypothetical ...    29   4.0  
AF016418-2|AAK18901.1|  893|Caenorhabditis elegans Hypothetical ...    29   4.0  
Z68008-1|CAA92002.1|  154|Caenorhabditis elegans Hypothetical pr...    28   5.3  
U23484-7|ABB88232.1|  738|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z68316-2|CAA92681.1|  352|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AF036704-5|AAB88558.2|  360|Caenorhabditis elegans Hypothetical ...    27   9.2  

>U29082-4|AAT92084.1|  279|Caenorhabditis elegans Troponin t protein
           3, isoform c protein.
          Length = 279

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 16/44 (36%), Positives = 29/44 (65%)
 Frame = +3

Query: 159 HEERAHRRLQIIYARKTKERQVFMQELKEIRQKNDKRMLKKVRD 290
           HEE  H +LQ    R+  ER+   +ELK++++K +KR L++ ++
Sbjct: 64  HEEEQHAKLQDYEERRRTEREKEEEELKKLKEKQEKRKLEREQE 107


>U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t protein
            3, isoform b protein.
          Length = 1178

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 16/44 (36%), Positives = 29/44 (65%)
 Frame = +3

Query: 159  HEERAHRRLQIIYARKTKERQVFMQELKEIRQKNDKRMLKKVRD 290
            HEE  H +LQ    R+  ER+   +ELK++++K +KR L++ ++
Sbjct: 898  HEEEQHAKLQDYEERRRTEREKEEEELKKLKEKQEKRKLEREQE 941


>U29082-2|AAT92082.1|  350|Caenorhabditis elegans Troponin t protein
           3, isoform a protein.
          Length = 350

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 16/44 (36%), Positives = 29/44 (65%)
 Frame = +3

Query: 159 HEERAHRRLQIIYARKTKERQVFMQELKEIRQKNDKRMLKKVRD 290
           HEE  H +LQ    R+  ER+   +ELK++++K +KR L++ ++
Sbjct: 64  HEEEQHAKLQDYEERRRTEREKEEEELKKLKEKQEKRKLEREQE 107


>U44759-1|AAA86906.1|  405|Caenorhabditis elegans troponin T
           protein.
          Length = 405

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +3

Query: 159 HEERAHRRLQIIYARKTKERQVFMQELKEIRQKNDKRMLKKVRD 290
           HEE    +L     R+  E++   QEL+E+++K +KR  ++  D
Sbjct: 74  HEEEEAAKLLDYEQRRVLEKEQIEQELRELKEKQEKRRAEREED 117


>U43282-4|AAA83615.1|  405|Caenorhabditis elegans Muscle positioning
           protein 2 protein.
          Length = 405

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +3

Query: 159 HEERAHRRLQIIYARKTKERQVFMQELKEIRQKNDKRMLKKVRD 290
           HEE    +L     R+  E++   QEL+E+++K +KR  ++  D
Sbjct: 74  HEEEEAAKLLDYEQRRVLEKEQIEQELRELKEKQEKRRAEREED 117


>U23523-10|AAP68941.1|  428|Caenorhabditis elegans Troponin t
           protein 2, isoform a protein.
          Length = 428

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +3

Query: 159 HEERAHRRLQIIYARKTKERQVFMQELKEIRQKNDKRMLKKVRD 290
           HEE    +L     R+  E++   QEL+E+++K +KR  ++  D
Sbjct: 83  HEEEEAAKLLDYEQRRVLEKEQMEQELRELKEKQEKRRAEREED 126


>AL021497-3|CAA16405.1|  613|Caenorhabditis elegans Hypothetical
           protein Y51A2D.5 protein.
          Length = 613

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 15/60 (25%), Positives = 33/60 (55%)
 Frame = +3

Query: 150 DTSHEERAHRRLQIIYARKTKERQVFMQELKEIRQKNDKRMLKKVRDSIGPIWYQVLSVP 329
           +  H E+A + L+ IY   T+  +  + E+K   ++  K+M ++ +   GP+ +++L  P
Sbjct: 218 ENGHTEQAEQVLEKIYGGNTEWIEYELAEIKTYAEERQKQMEEEKKS--GPVIWRILKTP 275


>AF039716-9|AAB96734.2|  548|Caenorhabditis elegans Hypothetical
           protein W03G9.7 protein.
          Length = 548

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
 Frame = +3

Query: 210 KERQVF-MQELKEIRQKNDKRMLKKVRDSIG--PIWYQVLSVPQRSA 341
           +E+Q   +QE  ++RQ+ ++R  K+ RDSIG  P+   V S  ++SA
Sbjct: 500 REKQAMALQEKLKLRQQKNRRNRKERRDSIGTPPLEQPVKSGKKKSA 546


>AF016418-2|AAK18901.1|  893|Caenorhabditis elegans Hypothetical
           protein C49G7.7 protein.
          Length = 893

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 9/66 (13%)
 Frame = +2

Query: 383 RPSHKNG*SHER-ARFIPTS--------KHYKLNELCIFRAE*SKRDASTTIPYDLRPSY 535
           RP HKN     R  R+I  +        K Y L+    F  + S++D +  + Y L    
Sbjct: 629 RPEHKNNRDRNRLCRYILRNLKVKGVIMKTYHLSSEA-FHKKISQQDLTPFVKYSLNKKR 687

Query: 536 RWETSC 553
           RWET C
Sbjct: 688 RWETKC 693


>Z68008-1|CAA92002.1|  154|Caenorhabditis elegans Hypothetical
           protein R08B4.3 protein.
          Length = 154

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 527 PSYRWETSCLQSECPAHVVWY 589
           P Y+W T CL   C  H+ WY
Sbjct: 97  PGYKW-TICLCKSCSRHMGWY 116


>U23484-7|ABB88232.1|  738|Caenorhabditis elegans Hypothetical
           protein EEED8.10a protein.
          Length = 738

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 402 ARVMKELGLYPRPNIINLMNCVYLG 476
           ++V+++LG   +  II L NC YLG
Sbjct: 565 SKVLEQLGSLKKLEIIQLRNCTYLG 589


>Z68316-2|CAA92681.1|  352|Caenorhabditis elegans Hypothetical
           protein K08E4.3 protein.
          Length = 352

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 156 SHEERAHRRLQIIYARKTKERQVFMQELKEIRQKND 263
           SH    H ++++    KTK R V    +++ R+K D
Sbjct: 127 SHHYHEHPQIEVQNVTKTKSRSVIRSAVEKTRRKRD 162


>AF036704-5|AAB88558.2|  360|Caenorhabditis elegans Hypothetical
           protein ZK185.1 protein.
          Length = 360

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
 Frame = +3

Query: 165 ERAHRRLQIIYARKTKERQVFMQELKEIRQ--KNDKRMLKKVRDS-IGPIWYQVLSVPQR 335
           ++A RR++   ARK+ ER++ + EL+  R    +D  + KK R S       Q L +P  
Sbjct: 204 DKARRRIKREMARKSLERRLRVLELRCARTWVPDDDVVFKKKRTSEENKALIQALKLPAT 263

Query: 336 SALDTLEFSI 365
           S+ D +   I
Sbjct: 264 SSHDDIVLKI 273


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,681,240
Number of Sequences: 27780
Number of extensions: 286842
Number of successful extensions: 755
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)