Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19b24
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA synthase|Sc...    28   1.4  
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac...    26   4.1  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    25   7.2  

>SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA
           synthase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 447

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 266 MSLPNSRSNKRIRPSVEADRNCSIINT 186
           M++   R NKR+ PSV A  NC  + T
Sbjct: 304 MAITKERFNKRVSPSVYAPTNCGNMYT 330


>SPCC18B5.11c |cds1||replication checkpoint kinase
           Cds1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = +3

Query: 546 PRSLISYLCRLSLRHARATR*NVAK 620
           P+  IS+LC++ ++H+R ++ N+ K
Sbjct: 137 PKDEISFLCQVPVKHSRDSQKNMIK 161


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -3

Query: 278 HSARMSLPNSRSNKRIRPSVEADRNCSIINTLFVR 174
           +SAR SL +SRSN    PS    R  S +   F R
Sbjct: 684 NSARESLRHSRSNMSRSPSPMLSRRSSTLRPSFER 718


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,276,303
Number of Sequences: 5004
Number of extensions: 42422
Number of successful extensions: 90
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)