Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19b21
         (580 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    27   1.5  
SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces pombe...    26   3.5  
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    26   3.5  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    26   4.6  
SPBCPT2R1.03 |||hypothetical protein|Schizosaccharomyces pombe|c...    25   6.1  
SPAC212.03 |||hypothetical protein|Schizosaccharomyces pombe|chr...    25   6.1  

>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +3

Query: 3   VTSHLDTARQTCNSFIKKYKDNNCIIVLKCSSYLQYNY 116
           +TSHLDT  +  + FI+K   ++C ++    + LQ+N+
Sbjct: 267 ITSHLDTLTKGISQFIEKRDAHSCKLLY---ALLQFNH 301


>SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 182

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 294 WNYLLRYYEKVYWRLPV*FFI 232
           W+ L+ YY  VYW L   F I
Sbjct: 103 WSQLILYYVPVYWLLKAIFLI 123


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 993

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
 Frame = +3

Query: 141 SPSSPKEPNPLKYNRPTGYG-PRTNLKVRSFR*RIRQASANTLSRSTEEGNSSHVGSISG 317
           SP++    N L+YN    YG   + +   +            LSRST  G+  +     G
Sbjct: 612 SPNATMHGNTLRYNLFNTYGYSESKISFEALNSIQPNIRPFLLSRSTFVGSGRYAAHWLG 671

Query: 318 *RKNYWSPLI 347
             K+ WS ++
Sbjct: 672 DNKSQWSDMV 681


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +3

Query: 156 KEPNPLKYNRPTGYGPRTNLKVRSFR*RIRQASANTLSRSTEEG 287
           K+P P   ++PT + P ++    +FR   R++   + S+ T  G
Sbjct: 128 KKPIPKTKSKPTSHAPVSDNVSSTFRNATRKSKKPSASKDTSRG 171


>SPBCPT2R1.03 |||hypothetical protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 129

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 39  NSFIKKYKDNNCIIVLKCSSYLQYNYN 119
           N+FI K + N   I+  C SYL+YN N
Sbjct: 105 NTFIGKQEYN---ILFDCYSYLKYNLN 128


>SPAC212.03 |||hypothetical protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 129

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 39  NSFIKKYKDNNCIIVLKCSSYLQYNYN 119
           N+FI K + N   I+  C SYL+YN N
Sbjct: 105 NTFIGKQEYN---ILFDCYSYLKYNLN 128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,296,243
Number of Sequences: 5004
Number of extensions: 48483
Number of successful extensions: 117
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)