Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte19b21
(580 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1059 + 27273267-27273316,27274077-27274163,27274245-272743... 40 0.001
03_02_0838 + 11641484-11642030,11643614-11643650,11643784-116438... 40 0.001
12_02_0928 + 24488891-24489675,24490369-24490421,24490479-244912... 30 1.2
01_07_0008 + 40389744-40389896,40389967-40390048,40390693-403908... 29 2.7
08_01_0118 + 947394-947885,948709-948810,948914-949219,949557-94... 27 8.2
06_01_0456 - 3249662-3249710,3249838-3250451,3250694-3250780,325... 27 8.2
04_04_1035 + 30283456-30283536,30284823-30285359,30285508-302865... 27 8.2
>06_03_1059 +
27273267-27273316,27274077-27274163,27274245-27274392,
27274615-27274732,27274798-27274859
Length = 154
Score = 40.3 bits (90), Expect = 0.001
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Frame = +1
Query: 238 ELDRQAPIHFLVVPK--KVIPVMSEASVDDEKIIGHLLLVANEVATKKGLYRQGYHVFLD 411
+++ QAP+H LV+PK + + +A +I+G+LL A VA K+G+ +GY V ++
Sbjct: 71 DINPQAPVHVLVIPKIRDGLTGLDKAEPRHVEILGYLLYAAKIVAEKEGI-AEGYRVVIN 129
Query: 412 ENHKIMKLKALHV 450
K L LH+
Sbjct: 130 NGPK--GLYMLHI 140
>03_02_0838 +
11641484-11642030,11643614-11643650,11643784-11643841,
11646176-11646265,11646796-11646913,11648093-11648277,
11648330-11648455,11648578-11648634,11648741-11648821,
11649068-11649102,11649265-11649354,11649443-11649599,
11649785-11649901
Length = 565
Score = 40.3 bits (90), Expect = 0.001
Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 9/79 (11%)
Frame = +1
Query: 205 EQI*KCVVFDEE-------LDRQAPIHFLVVP--KKVIPVMSEASVDDEKIIGHLLLVAN 357
++I VVFD+E ++ QAP H +++P K + +S+A +I+G+LL VA
Sbjct: 202 KEIPSTVVFDDEKVLAFRDINPQAPTHIVIIPKVKDGLTGLSKAEERHVEILGYLLYVAK 261
Query: 358 EVATKKGLYRQGYHVFLDE 414
VA ++GL GY + +++
Sbjct: 262 VVAKQEGL-EDGYRIVIND 279
>12_02_0928 +
24488891-24489675,24490369-24490421,24490479-24491229,
24491322-24491533,24491780-24492570,24492686-24492784
Length = 896
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 337 HLLLVANEVATKKGLYRQGYHVFLDENHKIMKLKALHVFGR 459
+LL + N+ K G YH F H +++ ALH+ GR
Sbjct: 521 NLLTLVNDAQNKAGDLYSSYHDFSVTQHDVLRDLALHMSGR 561
>01_07_0008 +
40389744-40389896,40389967-40390048,40390693-40390808,
40391107-40391195,40391859-40391904,40392248-40392716,
40392825-40392952,40393182-40393253,40393512-40393885,
40394005-40394545,40394653-40394952,40395167-40395268
Length = 823
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 409 DENHKIMKLKALHVFGRALHHMVWPS 486
D++ K+ A HV+G HHM W S
Sbjct: 791 DDDEKVEVSPASHVYGSGSHHMCWLS 816
>08_01_0118 +
947394-947885,948709-948810,948914-949219,949557-949616
Length = 319
Score = 27.5 bits (58), Expect = 8.2
Identities = 21/58 (36%), Positives = 25/58 (43%)
Frame = +3
Query: 135 LNSPSSPKEPNPLKYNRPTGYGPRTNLKVRSFR*RIRQASANTLSRSTEEGNSSHVGS 308
L+S SSP P PL + R FR R+ASA L TEE S G+
Sbjct: 23 LSSSSSPSPPPPLHLHLHLHRHRLALSTARFFRLAERRASAGPLVFETEEERSGWSGA 80
>06_01_0456 -
3249662-3249710,3249838-3250451,3250694-3250780,
3251509-3252384,3252445-3252534,3252645-3252696,
3253117-3253168,3253265-3253363,3253444-3253528,
3253620-3253668,3253749-3253816,3254417-3254482,
3255690-3255741,3256685-3256767,3256915-3256946,
3257271-3257466,3258542-3258607,3259797-3259869,
3260010-3260224
Length = 967
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +3
Query: 81 VLKCSSYLQYNYNEAVVFLNSPSSPKEPNPLKYNRPTGYGP 203
+++ Y NY AV FLN S PN Y +P P
Sbjct: 320 IIQAIGYFNANYIIAVAFLNKLESFDAPNLNDYAQPVAADP 360
>04_04_1035 +
30283456-30283536,30284823-30285359,30285508-30286512,
30286718-30287042,30287563-30287818,30287901-30288117,
30288743-30289095,30289330-30289833,30291267-30292467,
30292614-30292970,30293258-30293495,30294083-30295125,
30295234-30296649,30296731-30296855,30297036-30297314,
30297352-30297382,30298957-30299022,30299447-30299689,
30299848-30299898,30299980-30300071,30300182-30300249,
30300515-30300600,30300720-30300824,30300994-30301127,
30302403-30302436,30302620-30302892,30303019-30303288,
30303384-30303974,30304065-30304214
Length = 3376
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +1
Query: 289 IPVMSEASVDDEKIIGHLLLVANEVATKKGLYRQGYHVFLD 411
+ +++E S+DDE G + VA +V ++G R + +FL+
Sbjct: 132 LAMVTEVSMDDEFQKGFRVKVAKDVTLQEGFNRLRHAIFLN 172
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,079,691
Number of Sequences: 37544
Number of extensions: 280500
Number of successful extensions: 562
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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