Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19b17
         (662 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64857-10|AAC25860.1|  265|Caenorhabditis elegans Hypothetical p...    31   0.96 
AF047662-5|AAC04440.1|  385|Caenorhabditis elegans Hypothetical ...    31   0.96 
Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z81589-3|CAB04719.1|  256|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z68216-4|CAA92463.2|  565|Caenorhabditis elegans Hypothetical pr...    28   6.8  
U23510-9|AAC46781.1|  340|Caenorhabditis elegans Associated with...    27   9.0  
AF163019-1|AAD49324.1| 1312|Caenorhabditis elegans trithorax-rel...    27   9.0  
AF039718-1|AAB96746.1| 1312|Caenorhabditis elegans Abnormal cell...    27   9.0  

>U64857-10|AAC25860.1|  265|Caenorhabditis elegans Hypothetical
           protein C37C3.3 protein.
          Length = 265

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +2

Query: 137 SVDQMRQILNEIIDALESPDYASKLDEA 220
           ++D+ R++  EI DA+ +P + + +DEA
Sbjct: 180 NIDEQREVAKEIADAISNPGFNNAIDEA 207


>AF047662-5|AAC04440.1|  385|Caenorhabditis elegans Hypothetical
           protein T22B2.3 protein.
          Length = 385

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
 Frame = +2

Query: 239 EMLKMMQIVFPMVVQIEMETIKHHGFNNSREGIVQ--FTQLIRDLESIDGEVARLHTQIR 412
           E  K+++   P+V+Q  ++  ++      R+GIVQ  +  +  ++  I  ++ ++   IR
Sbjct: 79  EFKKVLESTVPIVIQTRLKISEYIKETEKRDGIVQKPYENVHNEVMQIQRDLGKVVKVIR 138

Query: 413 SHYLP--PVSISSSVDTSL*N 469
             Y+   PV+ S  +D  L N
Sbjct: 139 EKYISSIPVNDSRQIDGLLAN 159


>Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical protein
            C06B8.7 protein.
          Length = 3118

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 21/67 (31%), Positives = 30/67 (44%)
 Frame = -1

Query: 308  GALLSPFLFAQPWGRLFASFSTSHYQQLL*LHRVWKHNQAIPGRL*FHLVFVAFDRLIRF 129
            GAL+   LFA        + S ++YQ +  L+ +  HN A+     +H   VA D  I  
Sbjct: 2461 GALIKNCLFAYNSNSTALALSGNNYQVITLLNNIISHNFAL-----YHDTIVAHDVAINM 2515

Query: 128  EGTTCFS 108
               T FS
Sbjct: 2516 TRNTLFS 2522


>Z81589-3|CAB04719.1|  256|Caenorhabditis elegans Hypothetical
           protein T08G5.7 protein.
          Length = 256

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 369 RALMVRLPVFILKSEATTCPLCPS 440
           R L V L +FI+ S  T CP CP+
Sbjct: 9   RQLFVILKLFIIMSFMTKCPKCPT 32


>Z68216-4|CAA92463.2|  565|Caenorhabditis elegans Hypothetical
           protein F27C8.5 protein.
          Length = 565

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = +2

Query: 80  ILDH-AAMIRN*NMSSPQSVSVDQMRQILNEIIDALESPDYASKLDEAKEAAGNEMLKMM 256
           IL+H  + I   N++S ++ SV  M   +N+++           +DE  +   N M+ +M
Sbjct: 126 ILNHNGSPIMALNIASARAFSV--MDHTMNDLVHGFTEKMTGLGIDEVAKLTANSMIAVM 183

Query: 257 QIVFPMVVQIEM 292
             V PM  ++ +
Sbjct: 184 AAVLPMKKKVPL 195


>U23510-9|AAC46781.1|  340|Caenorhabditis elegans Associated with
           ran (nuclear import/export) function protein 5 protein.
          Length = 340

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/63 (25%), Positives = 30/63 (47%)
 Frame = +3

Query: 393 VFILKSEATTCPLCPSVLLLTHLCKTVLKILST*LNVRERSQKADCEISRISVYVKKTDN 572
           +F+LK   T     P   +  ++   +LK+         R +KADC+++  +V +K    
Sbjct: 239 IFLLKIGFTKTETIPDSDIFYNIMSDLLKLEK---GENSRKRKADCDLNASTVKIKDGKE 295

Query: 573 EEK 581
           EE+
Sbjct: 296 EEE 298


>AF163019-1|AAD49324.1| 1312|Caenorhabditis elegans trithorax-related
            protein LIN-59 protein.
          Length = 1312

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
 Frame = +2

Query: 338  VQFTQLIRD-LESIDGE-VARLHTQIRSHYLPPVSISSSVDT--SL*NSIKDIINLTKC* 505
            V+F  L R  LE+ID + + R    I SHY+    +SSS+ +  +  N+ +     T C 
Sbjct: 867  VEFVSLFRKWLEAIDDDDLERAFVAIESHYMSSSILSSSLQSKKAKDNAPRARALSTSCP 926

Query: 506  GKVPESR 526
              VP  R
Sbjct: 927  SPVPSKR 933


>AF039718-1|AAB96746.1| 1312|Caenorhabditis elegans Abnormal cell
            lineage protein 59 protein.
          Length = 1312

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
 Frame = +2

Query: 338  VQFTQLIRD-LESIDGE-VARLHTQIRSHYLPPVSISSSVDT--SL*NSIKDIINLTKC* 505
            V+F  L R  LE+ID + + R    I SHY+    +SSS+ +  +  N+ +     T C 
Sbjct: 867  VEFVSLFRKWLEAIDDDDLERAFVAIESHYMSSSILSSSLQSKKAKDNAPRARALSTSCP 926

Query: 506  GKVPESR 526
              VP  R
Sbjct: 927  SPVPSKR 933


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,643,223
Number of Sequences: 27780
Number of extensions: 297937
Number of successful extensions: 752
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)