Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19b17
         (662 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.5  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   2.6  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   4.5  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              21   7.9  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -2

Query: 409 DLSMKTGNLTINALQVTNK 353
           D+S++ G L+IN +Q TN+
Sbjct: 732 DISVEDGTLSINNIQKTNE 750


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 247 ENDANSLPHGCANRNGD 297
           E +A + PH C  +NGD
Sbjct: 15  ELNATNSPHTCRTKNGD 31


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +3

Query: 264 SSPWLCK*KWRQ 299
           S+ W+C+ +WRQ
Sbjct: 375 SNGWICEHRWRQ 386


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +1

Query: 391 PSSYSNPKPLPAPCV 435
           P    N KPLP  CV
Sbjct: 27  PRRKKNKKPLPTECV 41


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,008
Number of Sequences: 438
Number of extensions: 3819
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)