Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19b16
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.02c |sap1||switch-activating protein Sap1|Schizosacchar...    27   3.0  
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom...    26   5.2  
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma...    26   5.2  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    25   6.9  
SPBC1289.05c |vma10||V-type ATPase subunit G|Schizosaccharomyces...    25   9.1  
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch...    25   9.1  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    25   9.1  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    25   9.1  

>SPCC1672.02c |sap1||switch-activating protein
           Sap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 254

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -3

Query: 428 KNSSLAPSSTAATRELTSAALSEEI 354
           KN+SL+PSS+ A  + T  +L E+I
Sbjct: 14  KNASLSPSSSPAKAQRTHLSLEEKI 38


>SPCC63.03 |||DNAJ domain protein, DNAJC11
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 642

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 359 LRRAQQKSILSLQQLRKALKRNSSMHTRAIMLFQTIKSKIQKLK 490
           L   ++  +L LQ+L+ + +R      RA+ L + I  K QKL+
Sbjct: 470 LSNQKRLRLLRLQKLKDSQERKKVSAIRAVKLMKEIVEKKQKLE 513


>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 835

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 428 KNSSLAPSSTAATRELTSAALSEEI 354
           +N ++ PSST  TR  T+  L EE+
Sbjct: 559 QNPNILPSSTNPTRPFTTNTLDEEL 583


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 4/34 (11%)
 Frame = +2

Query: 521 NKDQKQL-HNR---PQVPNHLPQTLPNRIKSLRL 610
           NK +K + H++     V N LPQ +P+ ++SLRL
Sbjct: 576 NKTRKSISHSKNTDKHVGNELPQDIPSWLRSLRL 609


>SPBC1289.05c |vma10||V-type ATPase subunit G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 108

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -3

Query: 440 SCASKNSSLAPSSTAATRELTSAALSEEILGSILSVTC 327
           S A   S      T A+ E +S   S++++ +ILS+TC
Sbjct: 68  SQAEAESKKQVQDTFASIETSSQKNSDKVVDAILSITC 105


>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +2

Query: 563 NHLPQTLPNRIKSLRLFQNQ*RVTI 637
           N LP+++P RI+SLR +Q   + ++
Sbjct: 2   NILPKSIPIRIQSLRRYQGSLKTSL 26


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +1

Query: 439 ESYHVIPDNQIENSEAQVILA 501
           +S+ V PDN+I+N +A ++ A
Sbjct: 332 KSHDVAPDNKIDNPDADMVRA 352


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 160 DREYLQHQNFDFPCY 116
           DR +L+HQNFD   Y
Sbjct: 666 DRSFLKHQNFDVCVY 680


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,141,042
Number of Sequences: 5004
Number of extensions: 35104
Number of successful extensions: 109
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)