Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte19b15
(616 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|... 39 7e-04
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces... 29 0.71
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su... 27 2.8
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 27 2.8
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 26 3.8
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 26 3.8
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 26 3.8
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 26 3.8
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 26 3.8
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 26 3.8
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 26 3.8
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 26 3.8
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 26 3.8
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 26 3.8
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 26 3.8
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 26 3.8
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom... 26 5.0
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 25 8.7
>SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 162
Score = 38.7 bits (86), Expect = 7e-04
Identities = 22/89 (24%), Positives = 43/89 (48%)
Frame = +2
Query: 221 RKQQEHAAEEAYWTRRIENLKRVHEKINSGMELEYQKTLEETNELFNFINNDKNVNKLPP 400
+K+ A +E W + +K ++S + ++ +E E + IN+ + KL
Sbjct: 59 QKKAIDAIQEEEWKSNAKTIKDSQGSLDSNLLSAEFRSFQEKLEKQSSINDKELKIKLKE 118
Query: 401 CQEEKEKVLQCYSTNADKSLLCSVLVNQF 487
+ + +L+C S + DKSL+C L +F
Sbjct: 119 VESIRSDLLKCMSEHPDKSLICHPLAEKF 147
>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 658
Score = 28.7 bits (61), Expect = 0.71
Identities = 23/82 (28%), Positives = 37/82 (45%)
Frame = +2
Query: 254 YWTRRIENLKRVHEKINSGMELEYQKTLEETNELFNFINNDKNVNKLPPCQEEKEKVLQC 433
Y + + E++KR S M +Y++ E +E+ N + DK N L C+E + L
Sbjct: 434 YSSEKQESIKRKMADF-SFMLRDYKRAYEIYDEIRNTFSQDKAWNYLASCEEIQIICLLM 492
Query: 434 YSTNADKSLLCSVLVNQFNECV 499
+ N S L F+E V
Sbjct: 493 QNRNISLKSQISYLNKWFDEMV 514
>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 26.6 bits (56), Expect = 2.8
Identities = 25/114 (21%), Positives = 44/114 (38%), Gaps = 2/114 (1%)
Frame = +2
Query: 92 DNENAIQVSQEAIDRIQAQLNAKQAEXXXXXXXXXXXXXXXXXRKQQEHAAEEAYWTRRI 271
D + I + A+D A L AKQ E A +
Sbjct: 315 DTKTDITSEKSALDAYYATLRAKQKEESEFMDSENVDDEEDDDFLDVTTATSLQNKSTDY 374
Query: 272 ENLKRVHEKINSGMELEYQKT--LEETNELFNFINNDKNVNKLPPCQEEKEKVL 427
++KR E +NS +++ ++T +EE N L ++ + + QE K+ V+
Sbjct: 375 GSVKRKTENLNSDSDIQNKRTKSIEENNSLPPIVSTNGITDGDTEMQESKKNVI 428
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 26.6 bits (56), Expect = 2.8
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Frame = +2
Query: 299 INSGMELEYQKTLEETNELFNFINNDKNVNKLP--PCQE-EKEKV 424
++SG+ + T+++TNE+ + N + KLP P E EKE++
Sbjct: 737 VDSGLSKTERLTIQQTNEIKHVPTNTTSSVKLPQQPSNEDEKERI 781
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 3.8
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +2
Query: 260 TRRIENLKRVHEKINSGMELEYQKTLEETNELFNFINNDKNVNKLPPCQEEKEKVLQ 430
+ ++++K V +K+ + + Q E FI + PCQE +KVLQ
Sbjct: 576 SEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQ 632
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 3.8
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +2
Query: 260 TRRIENLKRVHEKINSGMELEYQKTLEETNELFNFINNDKNVNKLPPCQEEKEKVLQ 430
+ ++++K V +K+ + + Q E FI + PCQE +KVLQ
Sbjct: 576 SEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQ 632
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 3.8
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +2
Query: 260 TRRIENLKRVHEKINSGMELEYQKTLEETNELFNFINNDKNVNKLPPCQEEKEKVLQ 430
+ ++++K V +K+ + + Q E FI + PCQE +KVLQ
Sbjct: 576 SEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQ 632
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 3.8
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +2
Query: 260 TRRIENLKRVHEKINSGMELEYQKTLEETNELFNFINNDKNVNKLPPCQEEKEKVLQ 430
+ ++++K V +K+ + + Q E FI + PCQE +KVLQ
Sbjct: 576 SEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQ 632
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 26.2 bits (55), Expect = 3.8
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 404 QEEKEKVLQCYSTNADKSLLCSVLVNQ 484
QE++ + C S +D + LC +LVN+
Sbjct: 21 QEDQSVEIDCSSLPSDATELCEILVNE 47
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 3.8
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +2
Query: 260 TRRIENLKRVHEKINSGMELEYQKTLEETNELFNFINNDKNVNKLPPCQEEKEKVLQ 430
+ ++++K V +K+ + + Q E FI + PCQE +KVLQ
Sbjct: 576 SEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQ 632
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 3.8
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +2
Query: 260 TRRIENLKRVHEKINSGMELEYQKTLEETNELFNFINNDKNVNKLPPCQEEKEKVLQ 430
+ ++++K V +K+ + + Q E FI + PCQE +KVLQ
Sbjct: 576 SEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQ 632
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 3.8
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +2
Query: 260 TRRIENLKRVHEKINSGMELEYQKTLEETNELFNFINNDKNVNKLPPCQEEKEKVLQ 430
+ ++++K V +K+ + + Q E FI + PCQE +KVLQ
Sbjct: 576 SEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQ 632
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 3.8
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +2
Query: 260 TRRIENLKRVHEKINSGMELEYQKTLEETNELFNFINNDKNVNKLPPCQEEKEKVLQ 430
+ ++++K V +K+ + + Q E FI + PCQE +KVLQ
Sbjct: 576 SEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQ 632
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 3.8
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +2
Query: 260 TRRIENLKRVHEKINSGMELEYQKTLEETNELFNFINNDKNVNKLPPCQEEKEKVLQ 430
+ ++++K V +K+ + + Q E FI + PCQE +KVLQ
Sbjct: 576 SEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQ 632
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 3.8
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +2
Query: 260 TRRIENLKRVHEKINSGMELEYQKTLEETNELFNFINNDKNVNKLPPCQEEKEKVLQ 430
+ ++++K V +K+ + + Q E FI + PCQE +KVLQ
Sbjct: 576 SEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQ 632
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 3.8
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +2
Query: 260 TRRIENLKRVHEKINSGMELEYQKTLEETNELFNFINNDKNVNKLPPCQEEKEKVLQ 430
+ ++++K V +K+ + + Q E FI + PCQE +KVLQ
Sbjct: 576 SEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQ 632
>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 659
Score = 25.8 bits (54), Expect = 5.0
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 284 RVHEKINSGMELEYQKTLEET-NELFNFINNDKNVNKLPP 400
R EK+ +++ + L + +EL INND V LPP
Sbjct: 32 RPREKLQRLSHIQFSELLTDVADELQRRINNDPKVRFLPP 71
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.0 bits (52), Expect = 8.7
Identities = 8/19 (42%), Positives = 16/19 (84%)
Frame = +2
Query: 413 KEKVLQCYSTNADKSLLCS 469
K+K+ + Y+ N+D+++LCS
Sbjct: 2419 KDKLSRIYNENSDENILCS 2437
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,188,824
Number of Sequences: 5004
Number of extensions: 39916
Number of successful extensions: 131
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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