Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19b14
         (541 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc...    28   1.0  
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    25   5.4  
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    25   7.2  
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa...    25   9.5  
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90...    25   9.5  

>SPAC11E3.06 |map1||MADS-box transcription factor
           Map1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 17/70 (24%), Positives = 33/70 (47%)
 Frame = +2

Query: 47  STSLSYDSGDEANDTRVPYEQKSDEGNILDEIFTIVPDSESPVVNKMMNSVEFSDVNFIP 226
           ST + Y++  + +    P   K      L++ F    + ++P  NK+ +S++ S +NF P
Sbjct: 255 STGIDYETTGQHSVNSPPSTYKHRRS--LNKSFATRSEPQTPRKNKIRDSLQSSPLNFPP 312

Query: 227 ASGGSTVPAS 256
                 +P S
Sbjct: 313 RDRPPLIPIS 322


>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 446 ISDACKVNSKNEYIDVSNCKWRHLKTGF 363
           IS+  ++N   EYIDV +  W+ L+  F
Sbjct: 246 ISNNAQLNIPQEYIDVLDLDWKSLELLF 273


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 176 VNKMMNSVEFSDVNFIPASGGSTVPASETI 265
           +NK+M S+ FS  NF P+    +  +S ++
Sbjct: 202 LNKIMQSLNFSVENFFPSDESVSFSSSSSV 231


>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 669

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/33 (24%), Positives = 18/33 (54%)
 Frame = +3

Query: 42  FPLHLYLTILVTKQTIPVFHMNKSLMKETYWMR 140
           F L+LY+ I +  + +   H   ++ ++ +W R
Sbjct: 512 FNLNLYMPISLVDENMKAAHARDAIHRKKFWFR 544


>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +3

Query: 42  FPLHLYLTILVTKQTIPVFHMNKSLMKETYWMRFSQSYQIQ 164
           F  H++L  L +    PV    KS + E    R++ +YQ++
Sbjct: 113 FDFHMFLEQLRSSSAEPVAKYLKSFLSEFTKRRWTVNYQVK 153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,031,344
Number of Sequences: 5004
Number of extensions: 38177
Number of successful extensions: 125
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)