Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19b14
         (541 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0646 + 18363847-18364858,18365501-18365578,18366161-18366798     28   4.1  
06_03_0433 - 20718726-20719895                                         27   9.6  
04_04_1028 + 30230224-30231274,30231500-30231609,30232144-302321...    27   9.6  

>04_03_0646 + 18363847-18364858,18365501-18365578,18366161-18366798
          Length = 575

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +2

Query: 23  ERINKRISSTSLSYDSGDEANDTRVPYEQKSDEGNILDEIFTIV 154
           ER+ +    T  S+   DE  +T   YE   +E +++DE+  IV
Sbjct: 323 ERLKEIEKLTLTSWKETDEIENTNEEYESTDEELDLIDELAEIV 366


>06_03_0433 - 20718726-20719895
          Length = 389

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 44  SSTSLSYDSGDEANDTRVPYEQKSDEGNILDEI 142
           S T+   D    AN+     E KSDEGN+  E+
Sbjct: 265 SGTASGDDDKGSANEASDSNETKSDEGNVAAEV 297


>04_04_1028 +
           30230224-30231274,30231500-30231609,30232144-30232170,
           30233107-30234252
          Length = 777

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
 Frame = -1

Query: 517 FINYQK---FAFS*KSKNLHLHNNQTIFR 440
           FI YQK   F  S  SK +HLH  + IFR
Sbjct: 237 FILYQKEQIFKVSGNSKPMHLHQEEHIFR 265


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,626,897
Number of Sequences: 37544
Number of extensions: 228070
Number of successful extensions: 607
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)