Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19b12
         (329 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    25   3.9  
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom...    24   6.8  
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    23   9.0  

>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 40  MNDYFYKSSKGNDSKRKNNATLPXED 117
           MND ++   KGN+S    N+  P  +
Sbjct: 63  MNDLYFPFRKGNESLMTENSNYPISE 88


>SPCC1235.10c |sec6||exocyst complex subunit
           Sec6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 730

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +1

Query: 157 DATSQASIEYKDT--IVIESIYDNMNNLVEIVINKVSNVPRILMQLI 291
           +A  QAS+E +    I +E+ + N+N L +     V N  R + QL+
Sbjct: 138 EALYQASLEGQSDLPITLENSFSNLNTLSDNFDRLVLNFCRNIFQLV 184


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 14/38 (36%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = +1

Query: 151 CTDATSQASIEYKDTIVIES-IYDNMNNLVEIVINKVS 261
           C D  + +SI + +T+ I+S  YD++N+LV  V+  V+
Sbjct: 201 CIDNEALSSI-FANTLKIKSPSYDDLNHLVSAVMAGVT 237


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,045,732
Number of Sequences: 5004
Number of extensions: 14947
Number of successful extensions: 44
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)