Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19b12
         (329 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0582 + 18993816-18993890,18994050-18994446,18995645-189957...    27   3.6  
03_05_0800 - 27815322-27815838,27817549-27817805                       27   4.7  
01_01_0509 - 3713109-3713244,3713689-3713733,3713959-3714015,371...    27   4.7  

>08_02_0582 +
           18993816-18993890,18994050-18994446,18995645-18995748,
           18995863-18996004,18996118-18996237,18996341-18996465,
           18996903-18997061,18997161-18997323,18997420-18997545,
           18997628-18997711,18997761-18998173,18998199-18998273,
           18998463-18998663,18998862-18998971,18999072-18999156,
           18999365-18999493,18999596-18999701,18999825-18999913,
           19000064-19000366
          Length = 1001

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 40  MNDYFYKSSKGNDSKRKNNATLPXED 117
           MND+ YK  KG + +R +N  L   D
Sbjct: 257 MNDHLYKGYKGGNKRRTSNEYLAGYD 282


>03_05_0800 - 27815322-27815838,27817549-27817805
          Length = 257

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +1

Query: 193 TIVIESIYDNMNNLVEIVINKVSNVPRILMQLIGLM 300
           T + E  Y + + + E   N VSNVP +L+ L+GL+
Sbjct: 17  TELCEENYAHSSYIAEFY-NTVSNVPCVLLALVGLV 51


>01_01_0509 -
           3713109-3713244,3713689-3713733,3713959-3714015,
           3714088-3714438,3714585-3714862,3714939-3715289,
           3715378-3715647,3716035-3716103,3716194-3716304,
           3716503-3716583,3716825-3716914,3717032-3717262
          Length = 689

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 52  FYKSSKGNDSKRKNNA 99
           FY SS+G+D  R NNA
Sbjct: 646 FYSSSRGSDQSRTNNA 661


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,014,502
Number of Sequences: 37544
Number of extensions: 77022
Number of successful extensions: 171
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)