Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19b12
         (329 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF160941-1|AAD46881.1|  268|Drosophila melanogaster BcDNA.LD1972...    28   3.3  
AE014297-3865|AAF56520.1|  268|Drosophila melanogaster CG6120-PA...    28   3.3  
Z28622-1|CAA82262.1| 1293|Drosophila melanogaster xeroderma pigm...    27   7.5  
AY070566-1|AAL48037.1| 1293|Drosophila melanogaster LD47533p pro...    27   7.5  
AF209743-1|AAF24766.1| 1293|Drosophila melanogaster XPC-like pro...    27   7.5  
AE013599-2037|AAF58150.1| 1293|Drosophila melanogaster CG8153-PA...    27   7.5  
AE013599-2036|AAM68530.1| 1294|Drosophila melanogaster CG8153-PC...    27   7.5  

>AF160941-1|AAD46881.1|  268|Drosophila melanogaster BcDNA.LD19727
           protein.
          Length = 268

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
 Frame = -3

Query: 252 INDNFN*IIHVIVYRFYDYRVFI----FYGCLRCCICATXQCIHVQXXCI 115
           +  N+N   H+ +Y F    + I    F+GC  C +C   QC+ V   C+
Sbjct: 45  MTQNYN-HYHIALYVFLAIGILITLGAFFGC--CGVCRESQCLLVSFFCV 91


>AE014297-3865|AAF56520.1|  268|Drosophila melanogaster CG6120-PA
           protein.
          Length = 268

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
 Frame = -3

Query: 252 INDNFN*IIHVIVYRFYDYRVFI----FYGCLRCCICATXQCIHVQXXCI 115
           +  N+N   H+ +Y F    + I    F+GC  C +C   QC+ V   C+
Sbjct: 45  MTQNYN-HYHIALYVFLAIGILITLGAFFGC--CGVCRESQCLLVSFFCV 91


>Z28622-1|CAA82262.1| 1293|Drosophila melanogaster xeroderma
           pigmentosum group Ccomplementing factor protein.
          Length = 1293

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 79  SKRKNNATLPXEDAXXLDMNALXCCTDATSQASIEYKD 192
           SKR   AT P   A  +D+NAL    +  +  S+E ++
Sbjct: 224 SKRNVTATPPRSQAATMDVNALLALGENQNYQSVEVEE 261


>AY070566-1|AAL48037.1| 1293|Drosophila melanogaster LD47533p
           protein.
          Length = 1293

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 79  SKRKNNATLPXEDAXXLDMNALXCCTDATSQASIEYKD 192
           SKR   AT P   A  +D+NAL    +  +  S+E ++
Sbjct: 224 SKRNVTATPPRSQAATMDVNALLALGENQNYQSVEVEE 261


>AF209743-1|AAF24766.1| 1293|Drosophila melanogaster XPC-like
           protein isoform a protein.
          Length = 1293

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 79  SKRKNNATLPXEDAXXLDMNALXCCTDATSQASIEYKD 192
           SKR   AT P   A  +D+NAL    +  +  S+E ++
Sbjct: 224 SKRNVTATPPRSQAATMDVNALLALGENQNYQSVEVEE 261


>AE013599-2037|AAF58150.1| 1293|Drosophila melanogaster CG8153-PA,
           isoform A protein.
          Length = 1293

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 79  SKRKNNATLPXEDAXXLDMNALXCCTDATSQASIEYKD 192
           SKR   AT P   A  +D+NAL    +  +  S+E ++
Sbjct: 224 SKRNVTATPPRSQAATMDVNALLALGENQNYQSVEVEE 261


>AE013599-2036|AAM68530.1| 1294|Drosophila melanogaster CG8153-PC,
           isoform C protein.
          Length = 1294

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 79  SKRKNNATLPXEDAXXLDMNALXCCTDATSQASIEYKD 192
           SKR   AT P   A  +D+NAL    +  +  S+E ++
Sbjct: 225 SKRNVTATPPRSQAATMDVNALLALGENQNYQSVEVEE 262


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,738,633
Number of Sequences: 53049
Number of extensions: 150894
Number of successful extensions: 339
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 24,988,368
effective HSP length: 75
effective length of database: 21,009,693
effective search space used: 714329562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)