Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19b12
         (329 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75537-5|CAA99837.3|  335|Caenorhabditis elegans Hypothetical pr...    27   4.2  
Z68104-8|CAA92117.1| 1077|Caenorhabditis elegans Hypothetical pr...    26   7.3  
Z66563-4|CAA91470.1| 1077|Caenorhabditis elegans Hypothetical pr...    26   7.3  
AF435953-1|AAL30829.1| 1077|Caenorhabditis elegans eIF2 alpha ki...    26   7.3  
AF193341-1|AAF61201.1| 1077|Caenorhabditis elegans eukaryotic tr...    26   7.3  
AF036705-9|AAO91724.1|  686|Caenorhabditis elegans Hypothetical ...    25   9.7  

>Z75537-5|CAA99837.3|  335|Caenorhabditis elegans Hypothetical
           protein F18E2.4 protein.
          Length = 335

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -2

Query: 178 WMLAMLHLCNXSMHSCPNXVHLLL 107
           W++A+  LC   +H CP  ++L +
Sbjct: 272 WVIAIAELCWSIVHGCPAIIYLTM 295


>Z68104-8|CAA92117.1| 1077|Caenorhabditis elegans Hypothetical
           protein F46C3.1 protein.
          Length = 1077

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 305 GTISPINCIKIRGTLLTLLMTISTRLFMLSY 213
           GT+S  + I I GT L L+ T+  RLF  ++
Sbjct: 87  GTLSTSDPIDIGGTSLQLMPTLDGRLFSYTH 117


>Z66563-4|CAA91470.1| 1077|Caenorhabditis elegans Hypothetical
           protein F46C3.1 protein.
          Length = 1077

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 305 GTISPINCIKIRGTLLTLLMTISTRLFMLSY 213
           GT+S  + I I GT L L+ T+  RLF  ++
Sbjct: 87  GTLSTSDPIDIGGTSLQLMPTLDGRLFSYTH 117


>AF435953-1|AAL30829.1| 1077|Caenorhabditis elegans eIF2 alpha
           kinase protein.
          Length = 1077

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 305 GTISPINCIKIRGTLLTLLMTISTRLFMLSY 213
           GT+S  + I I GT L L+ T+  RLF  ++
Sbjct: 87  GTLSTSDPIDIGGTSLQLMPTLDGRLFSYTH 117


>AF193341-1|AAF61201.1| 1077|Caenorhabditis elegans eukaryotic
           translation initiationfactor 2 alpha kinase PEK protein.
          Length = 1077

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 305 GTISPINCIKIRGTLLTLLMTISTRLFMLSY 213
           GT+S  + I I GT L L+ T+  RLF  ++
Sbjct: 87  GTLSTSDPIDIGGTSLQLMPTLDGRLFSYTH 117


>AF036705-9|AAO91724.1|  686|Caenorhabditis elegans Hypothetical
           protein F37C4.2 protein.
          Length = 686

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 8   SLPCCSKKKFS*MITFINP 64
           S  CCSK+KFS ++ F  P
Sbjct: 245 SQECCSKEKFSEILKFSQP 263


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,750,799
Number of Sequences: 27780
Number of extensions: 84190
Number of successful extensions: 225
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 397381406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)