Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19b12
         (329 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    20   6.7  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    20   6.7  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          20   8.9  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      20   8.9  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +2

Query: 101 HYQXKMHXIWT 133
           HYQ K + +WT
Sbjct: 292 HYQGKENILWT 302


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +1

Query: 43  NDYFYKSSKGNDSKRKNN 96
           ND    ++  ND+ +KNN
Sbjct: 420 NDNIQNTNNQNDNNQKNN 437



 Score = 19.8 bits (39), Expect = 8.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 43  NDYFYKSSKGNDSKRKNN 96
           ND   K++K N + +KNN
Sbjct: 430 NDNNQKNNKKNANNQKNN 447


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 104 NVALFFLLESFPF 66
           N   FFL ++FPF
Sbjct: 230 NTYYFFLRQAFPF 242


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 104 NVALFFLLESFPF 66
           N   FFL ++FPF
Sbjct: 230 NTYYFFLRQAFPF 242


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,528
Number of Sequences: 438
Number of extensions: 860
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7342137
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)