Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19b11
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr 2...   184   1e-47
SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase |Schizosa...   170   2e-43
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    28   1.4  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    27   3.2  
SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase |Schizosaccharom...    26   5.6  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    25   7.4  
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei...    25   7.4  

>SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score =  184 bits (447), Expect = 1e-47
 Identities = 94/194 (48%), Positives = 129/194 (66%), Gaps = 1/194 (0%)
 Frame = +2

Query: 86  MPIKLLLARQIFDSTGVPTVEVDMVTELGLFRIGVPSTDSKKIAEATQLRDNNPAQYFGM 265
           M I+ + ARQI+DS G PTVEVD+ TE G+ R  VPS  S  I EA ++RD +  ++ G 
Sbjct: 1   MAIQKVFARQIYDSRGNPTVEVDLTTETGIHRAIVPSGASTGIWEALEMRDGDKTKWGGK 60

Query: 266 GVSSAIKNINVIIAPELIKQNLEVTMQKEIDQFLISLDGTENRSRLGANAILCVSLXXXX 445
           GV  A+ N+N IIAP ++K NL+VT QK  D+FL+ LDGTEN+S+LGANAIL VS+    
Sbjct: 61  GVLKAVGNVNNIIAPAVVKANLDVTDQKAADEFLLKLDGTENKSKLGANAILGVSMAICR 120

Query: 446 XXXXXXXXPLYRHISDMAGVT-TIILPVPHFTILTGGILSSNGLPFQEYIIMPTGASSFA 622
                   PL+++I++  G     +LPVP F +L GG  +   L FQE++I+PTGA SF+
Sbjct: 121 AGAAQKKLPLWKYIAENFGTKGPYVLPVPSFNVLNGGSHAGGDLAFQEFMILPTGAPSFS 180

Query: 623 DAMRIGSEIYRYVK 664
           +AMR G+E Y  +K
Sbjct: 181 EAMRWGAETYHTLK 194


>SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 440

 Score =  170 bits (413), Expect = 2e-43
 Identities = 86/192 (44%), Positives = 126/192 (65%), Gaps = 1/192 (0%)
 Frame = +2

Query: 92  IKLLLARQIFDSTGVPTVEVDMVTELGLFRIGVPSTDSKKIAEATQLRDNNPAQYFGMGV 271
           I+ + +R I+DS G PTVEV++ TELG FR  VPS  S    EA +LRDN+  ++ G GV
Sbjct: 4   IQKIYSRSIYDSRGNPTVEVELTTELGTFRSMVPSGASTGEWEAKELRDNDKNKWGGKGV 63

Query: 272 SSAIKNINVIIAPELIKQNLEVTMQKEIDQFLISLDGTENRSRLGANAILCVSLXXXXXX 451
           + A+ N+N II P L+K ++++T Q+ ID+F+I LDGT ++S+LGAN+I+ VS+      
Sbjct: 64  TIAVHNVNNIIGPALVKSDIKITDQRGIDEFMIKLDGTNDKSKLGANSIVGVSMAVARAA 123

Query: 452 XXXXXXPLYRHISDMAG-VTTIILPVPHFTILTGGILSSNGLPFQEYIIMPTGASSFADA 628
                 PLY +I  +AG  TT  +PVP F +L GG  +   L FQE++IMP  A +F++ 
Sbjct: 124 AAFLKIPLYEYIGKLAGSKTTECIPVPSFNVLNGGRHAGGDLAFQEFMIMPIKAPTFSEG 183

Query: 629 MRIGSEIYRYVK 664
           +R GSE+Y  +K
Sbjct: 184 LRWGSEVYHTLK 195


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 520 ASTTLYYSHWWNFIFKWTAVSRIH 591
           AS       WWN   +W A+ RIH
Sbjct: 881 ASQVFMMDPWWNGAVQWQAMDRIH 904


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 538 YSHWWNFIFKWTAVSRIHNYAYRSIFVCRCD 630
           Y  WW   F+W A +   NY Y SI +   D
Sbjct: 596 YIGWW---FRWIAYANPVNYGYESIMLNEFD 623


>SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 236

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = +2

Query: 299 IIAPELIKQNLE--VTMQKEIDQFLISLDGTENRSRLG 406
           ++A ++++ N    + +QKE    ++  DGT NR++LG
Sbjct: 34  VLARKVVEPNTPCLIKIQKEFGNEVLHEDGTLNRAKLG 71


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 16/54 (29%), Positives = 21/54 (38%)
 Frame = -2

Query: 640 TNTHRICKRRCSCRHNYVFLKRQSI*R*NSTSENSKVWYWQNYCSDACHIRYVP 479
           T+    CK  CSC H+    K       N T  + K W  + +C      R VP
Sbjct: 163 THIDHKCKEHCSCHHD----KFPRPVPHNGTKPDHKPWKHEEHCHHGKFPRPVP 212


>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
           Vps41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 886

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 1   EDISVHTQRIFNFKRTKYFRTFIHL 75
           ED+ + T  +F   +  YF+T +HL
Sbjct: 842 EDVRIDTDDVFKDDKIAYFKTRMHL 866


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,765,596
Number of Sequences: 5004
Number of extensions: 57396
Number of successful extensions: 136
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)