Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte19b11
(665 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0117 - 12486672-12486818,12487438-12487488,12487583-124877... 177 6e-45
10_02_0022 - 4290708-4290788,4291254-4291305,4291396-4291484,429... 159 2e-39
06_01_0262 - 1930552-1930632,1931096-1931152,1931236-1931287,193... 133 1e-31
03_02_0477 - 8770905-8770985,8771164-8771361,8771939-8772025,877... 128 4e-30
03_02_0365 - 7816966-7817046,7817441-7817492,7817590-7817678,781... 93 1e-19
02_01_0102 - 749122-749799,750123-750371,750753-750851,751380-75... 29 3.3
>09_03_0117 -
12486672-12486818,12487438-12487488,12487583-12487729,
12488037-12488354,12488450-12488604,12488941-12489248,
12490644-12491038
Length = 506
Score = 177 bits (431), Expect = 6e-45
Identities = 88/192 (45%), Positives = 128/192 (66%), Gaps = 1/192 (0%)
Frame = +2
Query: 92 IKLLLARQIFDSTGVPTVEVDMVTELG-LFRIGVPSTDSKKIAEATQLRDNNPAQYFGMG 268
++ + ARQI DS G PTVEVD+V G L R VPS S I EA +LRD + A Y G G
Sbjct: 51 VRSIRARQIVDSRGNPTVEVDLVAGDGRLHRSAVPSGASTGIYEALELRDGDGAAYGGKG 110
Query: 269 VSSAIKNINVIIAPELIKQNLEVTMQKEIDQFLISLDGTENRSRLGANAILCVSLXXXXX 448
V +A++NIN +IAP+L+ ++V Q ++D ++ +DGT N+S+LGANAIL VSL
Sbjct: 111 VLNAVRNINEVIAPKLV--GVDVRNQSDVDAIMLDIDGTPNKSKLGANAILGVSLSVCRA 168
Query: 449 XXXXXXXPLYRHISDMAGVTTIILPVPHFTILTGGILSSNGLPFQEYIIMPTGASSFADA 628
PLY+HI ++AG +++PVP F ++ GG + N L QE++++P GASSF++A
Sbjct: 169 GAGAKEVPLYKHIQELAGTKELVMPVPAFNVINGGSHAGNNLAMQEFMLLPVGASSFSEA 228
Query: 629 MRIGSEIYRYVK 664
+R+GSE+Y +K
Sbjct: 229 LRMGSEVYHALK 240
>10_02_0022 -
4290708-4290788,4291254-4291305,4291396-4291484,
4291565-4291615,4291699-4291893,4292010-4292090,
4292190-4292252,4292480-4292554,4292630-4292710,
4292784-4292888,4292977-4293057,4293156-4293242,
4293322-4293369,4293923-4293987,4294109-4294172,
4294828-4294896
Length = 428
Score = 159 bits (385), Expect = 2e-39
Identities = 90/194 (46%), Positives = 123/194 (63%), Gaps = 8/194 (4%)
Frame = +2
Query: 107 ARQIFDSTGVPTVEVDMVTELGLF-RIGVPSTDSKKIAEATQLRDNNPAQYFGMGVSSAI 283
ARQIFDS G PTVEVD+ G F R VPS S + EA +LRD + Y G GVS A+
Sbjct: 10 ARQIFDSRGNPTVEVDVCCSDGTFARAAVPSGASTGVYEALELRDGG-SDYLGKGVSKAV 68
Query: 284 KNINVIIAPELIKQNLEVTMQKEIDQFLIS-LDGTEN-----RSRLGANAILCVSLXXXX 445
N+N +IAP LI + + T Q E+D F++ LDGT+N + +LGANAIL VSL
Sbjct: 69 DNVNSVIAPALIGK--DPTSQAELDNFMVQQLDGTKNEWGWCKQKLGANAILAVSLAICK 126
Query: 446 XXXXXXXXPLYRHISDMAGVTTIILPVPHFTILTGGILSSNGLPFQ-EYIIMPTGASSFA 622
PLY+HI+++AG ++LPVP F ++ GG + N L Q E++I+PTGA+SF
Sbjct: 127 AGAIIKKIPLYQHIANLAGNKQLVLPVPAFNVINGGSHAGNKLAMQAEFMILPTGAASFK 186
Query: 623 DAMRIGSEIYRYVK 664
+AM++G E+Y +K
Sbjct: 187 EAMKMGVEVYHNLK 200
>06_01_0262 -
1930552-1930632,1931096-1931152,1931236-1931287,
1931373-1931461,1931551-1931601,1931696-1931890,
1932015-1932095,1932205-1932267,1933045-1933119,
1933194-1933352,1933353-1933463,1933536-1933616,
1933721-1933807,1933920-1933967,1934357-1934421,
1935002-1935065,1935220-1935288
Length = 475
Score = 133 bits (321), Expect = 1e-31
Identities = 93/227 (40%), Positives = 126/227 (55%), Gaps = 36/227 (15%)
Frame = +2
Query: 92 IKLLLARQIFDSTGVPTVEVDMVTELGLFRIG-VPSTDSKKIAEATQLRDNNPAQYFGMG 268
I+ + ARQIFDS G PTVEVD+ G F G VPS S I EA +LRD + Y G G
Sbjct: 5 IQSVKARQIFDSRGNPTVEVDVGLSDGSFARGAVPSGASTGIYEALELRDGG-SDYLGKG 63
Query: 269 VSSAIKNINVIIAPELIKQNLEVTMQKEIDQFLIS-LDGTEN-----RSRLGANAILCVS 430
V A+ N+N II P LI + + T Q +ID F++ LDGT N + +LGANAIL VS
Sbjct: 64 VLKAVSNVNTIIGPALIGK--DPTEQVDIDNFMVQQLDGTSNNWGWCKQKLGANAILAVS 121
Query: 431 LXXXXXXXXXXXXPLYR---HISDMAGVTTIILPVPHFTILTGG---------------- 553
L PLY+ HI+++AG T++LPVP F ++ GG
Sbjct: 122 LAVCKAGAMVKKIPLYQKLQHIANLAGNKTLVLPVPAFNVINGGSHAGNKLAMQVKYCLN 181
Query: 554 ----------ILSSNGLPFQEYIIMPTGASSFADAMRIGSEIYRYVK 664
I S++ QE++I+PTGASSF +AM++G E+Y ++K
Sbjct: 182 NKTMSMHDSVIFSAHLAAVQEFMILPTGASSFKEAMKMGVEVYHHLK 228
>03_02_0477 -
8770905-8770985,8771164-8771361,8771939-8772025,
8772094-8772179,8772270-8772368,8772431-8772551,
8773251-8773331,8773643-8773723,8773972-8774088,
8774185-8774256,8774621-8775055
Length = 485
Score = 128 bits (309), Expect = 4e-30
Identities = 62/186 (33%), Positives = 104/186 (55%)
Frame = +2
Query: 107 ARQIFDSTGVPTVEVDMVTELGLFRIGVPSTDSKKIAEATQLRDNNPAQYFGMGVSSAIK 286
ARQI D G P VEV + T + R + D+ + A A +RD + V+ A++
Sbjct: 52 ARQILDGRGEPAVEVSLHTNKAVHRASAAAADAPEGAAADAVRDAEKRKLLARAVADAVR 111
Query: 287 NINVIIAPELIKQNLEVTMQKEIDQFLISLDGTENRSRLGANAILCVSLXXXXXXXXXXX 466
IN ++ L+ ++ Q +IDQ ++ LD +++ +G N++L VS+
Sbjct: 112 VINDKVSEALV--GMDPQQQSQIDQAIMDLDKAHHKAEIGVNSMLAVSIAACKAGAAEKE 169
Query: 467 XPLYRHISDMAGVTTIILPVPHFTILTGGILSSNGLPFQEYIIMPTGASSFADAMRIGSE 646
PLY+HI+++ G + LP+P T++ GG + N LP QE +I+P GA +F +AM++GSE
Sbjct: 170 VPLYKHIAELVGKSATTLPIPAITVINGGTHAGNSLPIQEIMILPVGAKNFEEAMQMGSE 229
Query: 647 IYRYVK 664
Y ++K
Sbjct: 230 TYHHLK 235
>03_02_0365 -
7816966-7817046,7817441-7817492,7817590-7817678,
7817762-7817854,7817900-7818094,7818172-7818249,
7818353-7818415,7818806-7818880,7818958-7819038,
7819329-7819409,7819516-7819602,7819682-7819729,
7820317-7820381,7820566-7820629,7821254-7821322
Length = 406
Score = 93.5 bits (222), Expect = 1e-19
Identities = 62/137 (45%), Positives = 78/137 (56%), Gaps = 7/137 (5%)
Frame = +2
Query: 92 IKLLLARQIFDSTGVPTVEVDMVTELGLF-RIGVPSTDSKKIAEATQLRDNNPAQYFGMG 268
I+ + ARQIFDS G PTVEVD+ G F R VPS S + EA +LRD + Y G G
Sbjct: 5 IQSVKARQIFDSRGNPTVEVDICCSDGTFARAAVPSGASTGVYEALELRDGG-SDYLGKG 63
Query: 269 VSSAIKNINVIIAPELIKQNLEVTMQKEIDQFLI-SLDGTEN-----RSRLGANAILCVS 430
V A+ N+N II P LI + + T Q ID F++ LDGT+N + +LGANAIL VS
Sbjct: 64 VLKAVDNVNSIIGPALIGK--DPTEQTVIDNFMVQQLDGTKNEWGWCKQKLGANAILAVS 121
Query: 431 LXXXXXXXXXXXXPLYR 481
L PLY+
Sbjct: 122 LALCKAGAIIKKIPLYQ 138
Score = 42.7 bits (96), Expect = 3e-04
Identities = 22/50 (44%), Positives = 32/50 (64%)
Frame = +2
Query: 515 ILPVPHFTILTGGILSSNGLPFQEYIIMPTGASSFADAMRIGSEIYRYVK 664
IL V G I+ L +QE++I+PTGASSF +AM++G E+Y +K
Sbjct: 117 ILAVSLALCKAGAIIKKIPL-YQEFMILPTGASSFKEAMKMGVEVYHNLK 165
>02_01_0102 -
749122-749799,750123-750371,750753-750851,751380-751889,
752025-753905,754093-754296,754807-754899,755036-755122,
755241-755328,755533-755645,755943-757259,757398-758672,
759166-759273
Length = 2233
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -3
Query: 204 ESVEGTPIRNRPNSVTISTSTVGTPVES 121
+ V G P+ NR S T S G PVES
Sbjct: 486 QQVSGPPVTNRERSATSSADEHGRPVES 513
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,565,189
Number of Sequences: 37544
Number of extensions: 328916
Number of successful extensions: 869
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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