Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte19b10
(648 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 29 0.76
SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|... 27 1.8
SPBC530.01 |gyp1||GTPase activating protein Gyp1 |Schizosaccharo... 27 2.3
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 27 2.3
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac... 27 2.3
SPBC16H5.07c |ppa2||serine/threonine protein phosphatase Ppa2|Sc... 27 3.1
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 27 3.1
SPAC22F8.12c |shf1||small histone ubiquitination factor Shf1|Sch... 27 3.1
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual 26 4.1
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 26 5.4
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp... 26 5.4
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p... 26 5.4
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha... 25 7.1
SPAP27G11.11c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 7.1
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 25 7.1
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 25 7.1
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 25 7.1
SPBPB2B2.14c |||S. pombe specific DUF999 protein family 8|Schizo... 25 7.1
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 25 9.4
SPAC4D7.05 |sum1|tif34|translation initiation factor eIF3i|Schiz... 25 9.4
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch... 25 9.4
SPAC1687.01 |rpc19|rpa17, SPAPYUL23.01|DNA-directed RNA polymera... 25 9.4
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 9.4
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 28.7 bits (61), Expect = 0.76
Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 6/176 (3%)
Frame = +3
Query: 132 RSKHRLGLRQETSPKSNAVDQSSSSPEIPTERLQALELKSPRDSHSASESNIPTKEHALK 311
RSK + L E S A ++ S P+ER Q+ ELK + S + + + +K
Sbjct: 854 RSKKAIQLELENL-SSQAFRRNLSGSSSPSERSQSRELKLLQASEKRLKEQVEERNSLIK 912
Query: 312 --IEQFPNWNKSQIPVAIHKTGTDTSGDM-QANTL--RDL-KRCKPCKDHDVEGLQDWKP 473
+ +F N PV + T M QA + R+L K + K +++K
Sbjct: 913 NIVTRFTQLNTGSKPVNTNVEALTTISSMNQAVNMNFRELDKSIQEFKRKCQSMEREFKT 972
Query: 474 EVIGKNAVRTNITKKLRARSPLDQDLEDSLPRQIREIHNETRKSSRIIRDSRARLL 641
E+ + V +K+L S L++ ++ I N R S R+ DS + L
Sbjct: 973 ELRKLDGVLEARSKRL---SQLEERVKLLGAGSTSSIPNSPRASKRVSLDSEDKKL 1025
>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
2|||Manual
Length = 482
Score = 27.5 bits (58), Expect = 1.8
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Frame = +3
Query: 267 SASESNIPTKEHALKIEQFPNW-NKSQIPVAIHKTGT-DTSGDMQANTLRDLKRCKPCKD 440
+ S +N+P K HAL + N+ NK +P+A T T+ + + K P D
Sbjct: 49 TVSSTNVPKKRHAL--DDVSNFHNKEGVPLASKNTNVRHTTASVSTRRALEEKSIIPATD 106
Query: 441 HDVEGLQDWKPEVIGKN 491
+ + +P V +
Sbjct: 107 DEPASKKRRQPSVFNSS 123
>SPBC530.01 |gyp1||GTPase activating protein Gyp1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 27.1 bits (57), Expect = 2.3
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +1
Query: 130 SDPNTALDYDRKHPQRATQSTNLAVPLKSQPNVCKHSN*RVPETHIP-HRSPISPQKST 303
SDP T LD R H R +++ A P + +V +S+ + P+ HI RS P+ ++
Sbjct: 26 SDPVTVLDRSRTHHHRGRSTSSKAQPFRLDDSV--YSD-QPPKDHISLARSITRPESAS 81
>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 557
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/60 (23%), Positives = 29/60 (48%)
Frame = +3
Query: 144 RLGLRQETSPKSNAVDQSSSSPEIPTERLQALELKSPRDSHSASESNIPTKEHALKIEQF 323
RLG +E V + + +PE+P+ + ++KS ++ + + +E L+ E F
Sbjct: 25 RLGAEREKEAVERIVQEENQNPEVPSNDDASTDIKSRKEGN----MKVTAEEIGLETENF 80
>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 153 LRQETSPKSNAVDQSSSSPEIPTERLQALELKSPRDSHSASESNIP 290
L+ T+P A Q S+ P+ P E + ++K + H +E N P
Sbjct: 264 LKSSTAPSDLATPQPSTFPQPPVESHSSFDIKQ-KILHLLNEGNEP 308
>SPBC16H5.07c |ppa2||serine/threonine protein phosphatase
Ppa2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 378 TSGDMQANTLRDLKRCKPCKDHDVEGLQDWKPEVI 482
T GD+ + LK+C+P + DVE L D EV+
Sbjct: 19 TLGDVD-RWIEQLKKCEPLSEADVEMLCDKAREVL 52
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 26.6 bits (56), Expect = 3.1
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +3
Query: 159 QETSPKSNAVDQSSSSPEIPTERLQALELKSPRDSHSASESNIPTKEHA-LKIEQ 320
+ +S +S + SSS E E + E K S S+S S +E A +KIE+
Sbjct: 104 ESSSSESESSSSESSSSESEEEVIVKTEEKKESSSESSSSSESEEEEEAVVKIEE 158
Score = 26.2 bits (55), Expect = 4.1
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +3
Query: 135 SKHRLGLRQETSPKSNAVDQSSSSPEIPTERLQALELKSPRDSHSASESNIPTKE 299
S+ + ++ E +S++ SSS E E + +E K S S+SES+ E
Sbjct: 122 SEEEVIVKTEEKKESSSESSSSSESEEEEEAVVKIEEKKESSSDSSSESSSSESE 176
>SPAC22F8.12c |shf1||small histone ubiquitination factor
Shf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 165
Score = 26.6 bits (56), Expect = 3.1
Identities = 32/132 (24%), Positives = 58/132 (43%), Gaps = 12/132 (9%)
Frame = +3
Query: 159 QETSPKSNAVDQSSSSPEIPTERLQALE-LKSPRDSHSASESNIPTKEHALKIE-QFPNW 332
Q SP + VDQ+S R + K+PR S+ + S+ +KEH + P+
Sbjct: 16 QYRSPLKSNVDQNSFYESSYRSRQSYHQRTKTPRSSYDSPSSSTNSKEHNSPYHYRVPSN 75
Query: 333 NKSQIPVAIHKTGTDTSGDMQANTLRD------LKRCKPCKDHDVEGL----QDWKPEVI 482
N ++ + TDT+ ++ L D L+ CK ++ + L Q + +V
Sbjct: 76 NSTR--ASFGAASTDTNVELPKINLPDSSLSSKLQSCKSACENSSQSLLNVEQQYAQQVH 133
Query: 483 GKNAVRTNITKK 518
+RT+I ++
Sbjct: 134 FWEKIRTDIYRE 145
>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 26.2 bits (55), Expect = 4.1
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +3
Query: 198 SSSPEIPTERLQALELKSPRDSHSASESNIP-TKEHALKIEQ 320
SS+ + P+ER ALE K DS SA S T +H + E+
Sbjct: 299 SSTSQFPSERFNALE-KLLHDSLSAQSSTADGTSKHLAEFEK 339
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 25.8 bits (54), Expect = 5.4
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +3
Query: 144 RLGLRQETSPKSNAVDQSSSSPEIPTERLQALELKSPRDSHSASESNIPTKE-HALKIEQ 320
R L Q T S V Q S+P + ER++A +L+ +SA ++ + K+ L I+
Sbjct: 510 RQELAQVTEINSCRVLQHRSNPTLKYERIKAAQLEMLNAENSALKALLEDKKVDCLPIQS 569
Query: 321 F 323
F
Sbjct: 570 F 570
>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1210
Score = 25.8 bits (54), Expect = 5.4
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +3
Query: 399 NTLRDLKRCKPC-KDHDVEGLQDWKPEVIGKNAVRTNITKKLRARSPLDQDLEDSLPRQI 575
N + L+ KPC ++ V +D + IGK T +T++ R R D ++ LP
Sbjct: 292 NDFQMLEMMKPCIEEAFVIQDKDIALDYIGKRGSTTGVTREKRLRYAHDILQKELLPHIT 351
Query: 576 REIHNETRKS 605
ETRK+
Sbjct: 352 TMEGFETRKA 361
>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = +3
Query: 132 RSKHRLGLRQETSPKSNAVDQSSSSPEIPTERLQALELKSPRDSHSASES 281
R + R ++ T S+ +D+S +S + T ++ K P + +S+SES
Sbjct: 107 RKRARSSKKKATDSVSDKIDESVASYDSSTHLRRSSRSKKPVNYNSSSES 156
>SPAC20G8.08c |fft1||fun thirty related protein
Fft1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 25.4 bits (53), Expect = 7.1
Identities = 14/48 (29%), Positives = 20/48 (41%)
Frame = +2
Query: 407 KRPEEMQTM*GSRCRRTARLEARSYRKKRGSNEYYKEIESTFSIRSGF 550
KRP + C+R A +K G N K + ST+ + GF
Sbjct: 305 KRPFPSLEKAEALCQRNAHAATGKRKKSDGRNVGRKLVNSTYEVLQGF 352
>SPAP27G11.11c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 73
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -3
Query: 466 QSCSPSTS*SLHGLHLFRSLKVFACMSP 383
+ CS S + LHL +SL + C +P
Sbjct: 34 EECSGRFKPSSYSLHLLKSLSIIICENP 61
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 25.4 bits (53), Expect = 7.1
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +3
Query: 486 KNAVRTNITKKLRARSPLDQDLEDSLPRQIREIHNETRKS 605
KNA +T+ K + DQ+ E SL I EI N RKS
Sbjct: 183 KNAPKTS--PKDASNETADQEKELSLHTSIDEIQNPVRKS 220
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 25.4 bits (53), Expect = 7.1
Identities = 25/105 (23%), Positives = 42/105 (40%)
Frame = +3
Query: 117 FTMPIRSKHRLGLRQETSPKSNAVDQSSSSPEIPTERLQALELKSPRDSHSASESNIPTK 296
FT P + + L E + AV Q + E+P +A E+K S++A +P+
Sbjct: 727 FTKP-NTDAKTNLLPEKTFNEEAVKQKETEKEVPPTGPKASEIKDSVSSNNA----VPSS 781
Query: 297 EHALKIEQFPNWNKSQIPVAIHKTGTDTSGDMQANTLRDLKRCKP 431
+ F ++ I T T+G+ TL + KP
Sbjct: 782 TFNF-VSPFAAVSEKTNENNIPNDTTKTNGNATKRTLEQTEDAKP 825
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.4 bits (53), Expect = 7.1
Identities = 21/57 (36%), Positives = 29/57 (50%)
Frame = +1
Query: 130 SDPNTALDYDRKHPQRATQSTNLAVPLKSQPNVCKHSN*RVPETHIPHRSPISPQKS 300
S+P+T LDY ++ S+++ V N SN +VP T PH S IS KS
Sbjct: 3646 SEPST-LDYS---VSSSSLSSSIGVGSSFSSNSKVTSN-KVPSTVSPHSSSISDTKS 3697
>SPBPB2B2.14c |||S. pombe specific DUF999 protein family
8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 230
Score = 25.4 bits (53), Expect = 7.1
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Frame = +3
Query: 444 DVE-GLQDWKPEVIGKNAVRTNITK----KLRARSPLDQDLEDSLPRQIREIHNETRKSS 608
D+E GL+ KPE + K + TNI K K+ ++ + D+L + + H+
Sbjct: 9 DLEWGLELCKPEKVNKQNLFTNIIKPQKDKINIKTDKIKFFLDNLFTEFSKFHDSCYPDG 68
Query: 609 RIIRDSRAR 635
RI S+ R
Sbjct: 69 RISTRSKLR 77
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 25.0 bits (52), Expect = 9.4
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1
Query: 118 LLCRSDPNTALDYDRKHPQRATQSTNLAVPLKSQPNVCKHS 240
L C+ P A +DR + RAT NLA S+P+ +H+
Sbjct: 156 LYCK--PTLAATHDRYYEPRATDFPNLAHE-SSEPSSSRHT 193
>SPAC4D7.05 |sum1|tif34|translation initiation factor
eIF3i|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 25.0 bits (52), Expect = 9.4
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -1
Query: 318 VQFSKRALLWGYWTPMRNVSLGDSSVRVLA--DVRLGFQGNC*IGRLRCS 175
V+ K+ W + T ++ V + R+LA + R+G+ G + R+ S
Sbjct: 81 VKTGKQLYKWEFPTAVKRVEFNEDDTRILAVTEERMGYAGTVTVFRVPIS 130
>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 891
Score = 25.0 bits (52), Expect = 9.4
Identities = 19/47 (40%), Positives = 22/47 (46%)
Frame = +1
Query: 211 KSQPNVCKHSN*RVPETHIPHRSPISPQKSTL*KLNNFRTGIRVKFP 351
KS PN S+ P T PHRSP S Q T L+N+ FP
Sbjct: 697 KSTPNSTSFSS---PPT--PHRSPFSGQAFTGMGLSNYSLMSSSSFP 738
>SPAC1687.01 |rpc19|rpa17, SPAPYUL23.01|DNA-directed RNA polymerase
I and III subunit Rpc19 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 125
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +3
Query: 111 CVFTMPIRSKHRLGLRQETSPKSNAVD 191
C +++P S+ ++ R +T+P + AVD
Sbjct: 63 CGYSIPHPSEAKMNFRIQTAPSTTAVD 89
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.0 bits (52), Expect = 9.4
Identities = 15/65 (23%), Positives = 31/65 (47%)
Frame = +3
Query: 159 QETSPKSNAVDQSSSSPEIPTERLQALELKSPRDSHSASESNIPTKEHALKIEQFPNWNK 338
+ T+ S+ SSS+ PTE+ A + SP++ S P++ + P+ +
Sbjct: 471 KSTTNDSSPPKDSSSTSTQPTEQSNAQQAPSPKEEERPLPSE-PSQNQPAEYRDTPDTPR 529
Query: 339 SQIPV 353
+ +P+
Sbjct: 530 NIMPL 534
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,815,328
Number of Sequences: 5004
Number of extensions: 63789
Number of successful extensions: 242
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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