Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte19b10
(648 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0027 - 360909-360926,361588-361644,361765-361854,361953-36... 35 0.064
06_01_0629 - 4582045-4582140,4582218-4582480,4582584-4582704,458... 31 0.60
11_06_0667 + 26071774-26072070,26072352-26073153,26073209-260734... 31 0.79
07_01_1104 - 10160493-10160599,10160632-10160637,10160930-101609... 29 2.4
06_01_0619 - 4501296-4501561,4501664-4501784,4501915-4502253,450... 29 3.2
01_06_0910 - 32922459-32922646,32922725-32922823,32923371-329235... 28 5.6
01_01_0590 + 4396958-4397155,4397246-4397335,4397445-4397583,439... 28 5.6
06_01_0065 + 549972-550770,551577-552190,552392-552544,552769-55... 28 7.4
10_07_0160 - 13656172-13656476,13656799-13657528 27 9.7
06_01_1133 + 9364842-9364850,9364929-9365048,9365157-9365476,936... 27 9.7
>04_01_0027 -
360909-360926,361588-361644,361765-361854,361953-362038,
362159-362219,362310-362480,362555-362701,362773-362910
Length = 255
Score = 34.7 bits (76), Expect = 0.064
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = +3
Query: 465 WKPE-VIGKNAVRTNITKKLRARSPLDQDLEDSLPRQIREIHNETR--KSSRIIRDSRAR 635
W PE V+G + + R R D D ++ RQ+RE H R + +R+I D+ A
Sbjct: 46 WDPEGVLGPPQGGHIVRLEFRRRLERDSDAREAFERQVREEHERRRQEREARVIPDTDAG 105
Query: 636 LLE 644
L+E
Sbjct: 106 LVE 108
>06_01_0629 -
4582045-4582140,4582218-4582480,4582584-4582704,
4582833-4583171,4583208-4583245,4583355-4583670,
4583753-4584006,4586417-4586546
Length = 518
Score = 31.5 bits (68), Expect = 0.60
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +2
Query: 437 GSRCRRTARLEARSYRKKRGS--NEYYKEIESTFSIRSGFRRFIASTNQGNT 586
G C T R+ A R+ G Y+K+++ ++ GFR F+ T+QG T
Sbjct: 39 GLNCNETKRINA-GVRRNLGCLPEVYHKKLKIAVPLKHGFRAFVNVTDQGVT 89
>11_06_0667 +
26071774-26072070,26072352-26073153,26073209-26073411,
26075078-26075521,26075703-26075758,26076323-26076402,
26077098-26077174,26077279-26078301
Length = 993
Score = 31.1 bits (67), Expect = 0.79
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -2
Query: 512 CNIRSNRVFSDNFWLPILQSFDIVI 438
C+I+S+ + D+ W P L SFDI +
Sbjct: 825 CDIKSSNILLDSSWSPRLSSFDIAV 849
>07_01_1104 -
10160493-10160599,10160632-10160637,10160930-10160975,
10161053-10161190,10161275-10161679,10163193-10163330,
10163401-10163482,10163596-10163943,10164294-10164655,
10165154-10165209,10166428-10166558,10166564-10166628,
10169191-10169631
Length = 774
Score = 29.5 bits (63), Expect = 2.4
Identities = 20/85 (23%), Positives = 41/85 (48%)
Frame = +3
Query: 237 LELKSPRDSHSASESNIPTKEHALKIEQFPNWNKSQIPVAIHKTGTDTSGDMQANTLRDL 416
L+ ++ ++ +N T ++++ ++KS P A + T T S + A R
Sbjct: 421 LDQSYDENADTSKTTNANTSSSVWRVKKLLQFDKSHRP-AYYGTWTMKSSTVSA---RHP 476
Query: 417 KRCKPCKDHDVEGLQDWKPEVIGKN 491
+ P D+DV+ ++W+ E G+N
Sbjct: 477 FKVDPLLDYDVDSDEEWEEEEPGEN 501
>06_01_0619 -
4501296-4501561,4501664-4501784,4501915-4502253,
4502290-4502327,4502673-4502757,4502840-4503093,
4503868-4503961
Length = 398
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 455 TARLEARSYRKKRGSNE-YYKEIESTFSIRSGFRRFIASTNQGNT 586
T R+ A R G E Y+K+++ ++ GFR F+ T+QG T
Sbjct: 33 TERINAVVRRNLGGLPEVYHKKLKIAVPLKHGFRAFVNVTDQGVT 77
>01_06_0910 -
32922459-32922646,32922725-32922823,32923371-32923502,
32923585-32923743,32924553-32924711,32924897-32925052,
32925846-32926044
Length = 363
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/69 (24%), Positives = 34/69 (49%)
Frame = -3
Query: 286 ILDSDAECESRGLFSSSACRRSVGISGELLDWSTALLFGDVSCRSPRRCLDLIGIVKTQD 107
I+D +C+ ++++ ++ SG+L W AL+ G+ PR +GI +
Sbjct: 201 IIDGFPDCKIGNIYANGDHSAALDESGQLYIWGRALI-GEHDDDQPRPVFPSLGISQVA- 258
Query: 106 IGCYHLLYI 80
+G +H L +
Sbjct: 259 LGWHHALVL 267
>01_01_0590 +
4396958-4397155,4397246-4397335,4397445-4397583,
4398125-4398243,4398492-4398559,4399409-4399457,
4399713-4400732
Length = 560
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +1
Query: 76 GKCT--KDDSILCLVFLLCRSDPNTALDYDRKHPQRATQSTNLAVPL 210
GK T K S+ LV +LC S P TA+ +DR AT + V +
Sbjct: 287 GKVTMWKPTSVKPLVTMLCHSGPVTAIAFDRGGHLMATAGVDRKVKI 333
>06_01_0065 +
549972-550770,551577-552190,552392-552544,552769-552885,
552972-553076,553269-553334,553430-553494,553577-553778,
554026-554169,554212-554340
Length = 797
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +3
Query: 363 KTGTDTSGDMQANTLRDLKRCKPCKDHDVEGLQDW 467
K D +G++ + D +R + C++HD DW
Sbjct: 416 KALVDKAGNLAMKRIIDRRRAQFCQEHDENSKHDW 450
>10_07_0160 - 13656172-13656476,13656799-13657528
Length = 344
Score = 27.5 bits (58), Expect = 9.7
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 13/83 (15%)
Frame = -3
Query: 271 AECESRGLFSSSACRRSVGISGELLDWSTALLFGDVSCRS------PRRCLDLIGIVK-- 116
A+C+S S +R V + +++D++ A+L D+ RS P + +IG VK
Sbjct: 193 AQCQSSP--SKGETKRCVTSAEDMIDFAVAMLGDDIVVRSTVLPNGPGESI-MIGKVKGI 249
Query: 115 -----TQDIGCYHLLYIFRIIYC 62
T + C+ L+ + + YC
Sbjct: 250 NGGKITSSVSCHEYLFPYMVYYC 272
>06_01_1133 +
9364842-9364850,9364929-9365048,9365157-9365476,
9366267-9366428,9367151-9367235,9367352-9367501,
9367588-9367635,9367705-9367773,9367897-9368600,
9369426-9369561,9369636-9369856,9370355-9370486,
9371316-9371406,9371878-9371925,9372004-9372132,
9372357-9372626
Length = 897
Score = 27.5 bits (58), Expect = 9.7
Identities = 24/98 (24%), Positives = 39/98 (39%)
Frame = +3
Query: 156 RQETSPKSNAVDQSSSSPEIPTERLQALELKSPRDSHSASESNIPTKEHALKIEQFPNWN 335
+QE SP SN++ P +L++ +DS +S+ N P+ K N
Sbjct: 432 QQEMSPDSNSIVNGCHWPR--DMKLRSDTRSGIKDSVVSSQCNSPSTRSFRKKGTLQMEN 489
Query: 336 KSQIPVAIHKTGTDTSGDMQANTLRDLKRCKPCKDHDV 449
S A + DT+ + A D R + C D +
Sbjct: 490 NSSFVDAQSDSMEDTNNEHSATDGCDSSRKEECVDESI 527
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,442,356
Number of Sequences: 37544
Number of extensions: 386920
Number of successful extensions: 1158
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1158
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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