Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19b10
         (648 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    25   1.6  
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    23   6.3  
DQ230894-1|ABD94313.1|  315|Anopheles gambiae zinc finger protei...    23   8.3  
DQ230893-1|ABD94311.1|  315|Anopheles gambiae zinc finger protei...    23   8.3  
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    23   8.3  

>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
 Frame = +3

Query: 402 TLRDLKRCKPCKDHDVEGLQDWKPE----VIGKNAVRTNITKKLRARSPLDQDLEDSLPR 569
           TL+DLK  K C +   +    +K E    +  K  + T+  K++ A      D  +SL  
Sbjct: 243 TLKDLKLAKKCTEEKEQQYNQFKQEMEAILARKKELETSKAKQV-AIGQRSTDEINSLEE 301

Query: 570 QIREIHNETRKSSRIIRDSRAR 635
           +   + +   K  R + D+ A+
Sbjct: 302 KTERLEDTISKQKRELMDALAK 323


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 14/64 (21%), Positives = 27/64 (42%)
 Frame = +3

Query: 456  LQDWKPEVIGKNAVRTNITKKLRARSPLDQDLEDSLPRQIREIHNETRKSSRIIRDSRAR 635
            L+D   E+ GKN  R  + +   A   L Q + D    +   +H  T   +  ++     
Sbjct: 933  LEDVVEELEGKNRERDELIRYSTALRDLTQMMRDIRKSRFSHLHKLTTHMALRVKHKFTN 992

Query: 636  LLEI 647
            +++I
Sbjct: 993  IMQI 996


>DQ230894-1|ABD94313.1|  315|Anopheles gambiae zinc finger protein
           183 protein.
          Length = 315

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +1

Query: 139 NTALDYDRKHPQRATQSTNLAVPLKSQPNVCK 234
           N A    RK P RA  +    V    QP++CK
Sbjct: 151 NAASGMVRKGPIRAPANIRSTVRWDYQPDICK 182


>DQ230893-1|ABD94311.1|  315|Anopheles gambiae zinc finger protein
           183 protein.
          Length = 315

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +1

Query: 139 NTALDYDRKHPQRATQSTNLAVPLKSQPNVCK 234
           N A    RK P RA  +    V    QP++CK
Sbjct: 151 NAASGMVRKGPIRAPANIRSTVRWDYQPDICK 182


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 450 EGLQDWKPEVIGKNAVRTNI 509
           EGL +WKP  I K++   ++
Sbjct: 137 EGLVEWKPPAIYKSSCEIDV 156


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 698,539
Number of Sequences: 2352
Number of extensions: 14915
Number of successful extensions: 25
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 63977715
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)