Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19b10
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    24   1.1  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    24   1.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.5  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   4.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.9  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 86  QKMIASYVLCFYYADQIQTPPWTTT 160
           +K IA     + Y D I T P+T T
Sbjct: 211 RKFIAEIAFAYRYGDAIPTVPYTET 235


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +2

Query: 440 SRCRRTARLEARSYRKK-RGSNEYYKEIESTFSIRSGFRRFIAS 568
           SR RR +R   R YRKK R   + + E E     R+  +R+  S
Sbjct: 232 SRERRCSRDRNREYRKKDRQYEKLHNEKEKLLEERTSRKRYSRS 275


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = +3

Query: 417 KRCKPCKDHDVEGLQDWKPEVIGKNAVRTNITKKLRARSPLDQDLEDSLPRQIREIH 587
           KRCK         LQ+ +    GK+ + T+      +R+PL Q+ +  +  +I   H
Sbjct: 471 KRCKDLASFMGNLLQETRTPGFGKDVLATDERSFSGSRNPLLQEHDSVMLGEISPHH 527


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +1

Query: 88  KDDSILCLVFLLCRSDPNTALDYDRKHPQRATQSTNLAVPLKSQPN 225
           KD+ I+ L  LLCR D    +   R H  +  Q  +L +  + + N
Sbjct: 14  KDEKIVELEALLCRRD--AEIQELRSHLDKFLQCASLKLAFEPRRN 57


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +3

Query: 450 EGLQDWKPEVIGKNAVRTNI 509
           +GL +WKP  I K++   ++
Sbjct: 138 QGLVEWKPPAIYKSSCEIDV 157


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,179
Number of Sequences: 438
Number of extensions: 4547
Number of successful extensions: 17
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)