Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19b09
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1271.13 |mrpl8||mitochondrial ribosomal protein subunit L8|S...    26   4.2  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    25   7.3  
SPAC30D11.05 |aps3||AP-3 adaptor complex subunit Aps3 |Schizosac...    25   7.3  
SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr...    25   9.6  
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom...    25   9.6  
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    25   9.6  
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate...    25   9.6  

>SPBC1271.13 |mrpl8||mitochondrial ribosomal protein subunit
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 207

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +2

Query: 395 TICTSSHIMKECL--KNNQSVQDFLVKEEFETSHWPCDKCLEVLKTIKMFWK 544
           T  T  +I K  L  KN ++  D LV++E E+ H    +  E  KT+K  WK
Sbjct: 145 TPITRKNIHKVLLFRKNGKAEFDQLVQKEKESEHARLKEDHEDEKTVKKDWK 196


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 74  QKDNISEYGQYENQNSMNYSVNNINSHIFGRSEG 175
           Q  N +    Y N N+ NY+ NN NS   G S+G
Sbjct: 611 QNYNNNNNQNYGNNNNQNYN-NNNNSSQGGNSQG 643


>SPAC30D11.05 |aps3||AP-3 adaptor complex subunit Aps3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 165

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 339 LVLQVMIFNNVTKVRTDMIYTGISDLIQ 256
           ++  V IFNN  K R    YT I + IQ
Sbjct: 1   MIYAVFIFNNKGKPRLTKFYTPIDESIQ 28


>SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +3

Query: 153 TFSDVAKVKLNRTNP 197
           T SD AKV+LN TNP
Sbjct: 76  TTSDDAKVELNNTNP 90


>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 65  ITVQKDNISEYGQYENQNSMNYSVNNINSHIFGR 166
           ++  +DN S   Q  N +S N  +++ +S IFGR
Sbjct: 292 LSTLQDNASLTSQGSNLSSQNSGLSSSSSGIFGR 325


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 16/53 (30%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
 Frame = +2

Query: 455 DFLVKEEFETSHWPCDKCLEVLKTIKMFWKIIIEKLFHIETSNREQSTL-HPA 610
           +FL      T HW CD     LK +  F     E       + R Q  L HP+
Sbjct: 2   EFLNIPTKNTFHWSCDPLFNELKRLSCFKSFTYENDLKTFKALRSQLCLSHPS 54


>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
           transferase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 453

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 289 YDIHRHIRPHPIS 251
           YD+H H+  HPIS
Sbjct: 391 YDLHMHLLAHPIS 403


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,662,376
Number of Sequences: 5004
Number of extensions: 54732
Number of successful extensions: 137
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)