Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19b09
         (658 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0267 - 11316227-11316495,11316589-11316853,11317247-11317351     28   5.7  
03_04_0161 + 17838466-17838551,17842379-17842445,17842537-178426...    28   5.7  
01_01_0908 + 7158172-7158356,7159436-7159866,7159953-7161061,716...    28   7.5  
10_08_0985 - 22042801-22042963,22043019-22043138,22043261-220435...    27   9.9  
07_03_1743 - 29167078-29167290,29167389-29168159                       27   9.9  
03_05_0730 + 27208293-27208813,27209052-27209173,27210429-272104...    27   9.9  

>05_03_0267 - 11316227-11316495,11316589-11316853,11317247-11317351
          Length = 212

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/54 (20%), Positives = 26/54 (48%)
 Frame = +2

Query: 62  KITVQKDNISEYGQYENQNSMNYSVNNINSHIFGRSEGKIKSYKSCTDLRAWSH 223
           K+ +    + + G + +Q   N+ ++ +  H+ G +    +S+K  T +  W H
Sbjct: 18  KMEILDKRLGQQGDHISQILENFMISGVVLHLIGDAAQWYQSFKLVTPVHDWPH 71


>03_04_0161 +
           17838466-17838551,17842379-17842445,17842537-17842662,
           17842756-17842886,17843121-17843220,17843334-17843466,
           17843500-17843544,17843545-17843608,17843692-17844469,
           17844897-17845229,17845427-17845634,17845733-17845809,
           17846168-17846240,17846343-17846413,17846597-17846716,
           17846815-17846879,17846974-17847124
          Length = 875

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
 Frame = +2

Query: 317 KIMTCKTSGRLAPRCQPNCKSKIVLDTICTSSHIMKECLKN---NQSVQDFLVKEEFETS 487
           K M    +  +  +CQ N K +++    C +    + C+K      S  DF  K  +   
Sbjct: 96  KKMLTGENALMCHQCQRNDKGRVIWCKSCNNKRFCEPCMKRWYPGLSEVDFAAKCPYCRK 155

Query: 488 HWPCDKCLEVLKTIKMFWKIIIEK 559
           +  C  CL ++   K   K I E+
Sbjct: 156 NCNCKACLRMIGVEKPPEKKISEE 179


>01_01_0908 +
           7158172-7158356,7159436-7159866,7159953-7161061,
           7161372-7162820
          Length = 1057

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +2

Query: 413 HIMKECLKNNQSVQDFLVKEEFETSHWPCDKCLEVLKT 526
           H  K+C ++  S   F V +      W C KCL+ LKT
Sbjct: 83  HDQKKCDEHKASSSPFSVAK---FRRWDCSKCLDKLKT 117


>10_08_0985 -
           22042801-22042963,22043019-22043138,22043261-22043562,
           22044055-22044351,22044448-22044556,22044826-22045358,
           22045446-22045644,22045741-22045865,22045937-22046020,
           22046093-22046221,22046337-22046465,22046593-22046739,
           22047106-22047346,22047859-22047980
          Length = 899

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 176 KIKSYKSCTDLRAWSHDEKARDRYL 250
           +IK Y    +L+ W  DEKARD+++
Sbjct: 163 EIKPYTPGENLQKWLADEKARDQFV 187


>07_03_1743 - 29167078-29167290,29167389-29168159
          Length = 327

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +2

Query: 59  FKITVQKDNISEYGQYENQNSMNYSVNNINS--HIFGRSEGKIKSYKSCTDLRAWSH 223
           + I   K  I E+ +YE    ++  +   ++  H+F   +G   + K C   + WSH
Sbjct: 93  YVINYSKLRIWEFVEYERMVYLDADIQVFDNIDHLFDLDKGAFYAVKDCFCEKTWSH 149


>03_05_0730 +
           27208293-27208813,27209052-27209173,27210429-27210477,
           27210689-27210938,27211474-27211619,27211699-27211846,
           27212544-27212612,27212641-27212784
          Length = 482

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/59 (27%), Positives = 25/59 (42%)
 Frame = -1

Query: 442 VVLQTFLHDVTRSADGIKHDFRLAVGLTSRR*PSTGLTSHDFQ*CDQSANRYDIHRHIR 266
           +V    +H  T S    +HD    +       PS G+  HD+   D  + R DIH  ++
Sbjct: 233 IVAAAEIHS-TNSRKSFRHDGLDILAQDDVHGPSNGVAVHDYDINDVDSERDDIHARLQ 290


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,826,887
Number of Sequences: 37544
Number of extensions: 303930
Number of successful extensions: 708
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)