Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte19b08
(710 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory... 29 0.66
SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1 type|Schizosaccharom... 28 1.1
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 27 2.0
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 27 2.6
SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces pomb... 27 3.5
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce... 26 6.1
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 25 8.1
SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce... 25 8.1
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz... 25 8.1
>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
factor |Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 29.1 bits (62), Expect = 0.66
Identities = 25/82 (30%), Positives = 40/82 (48%)
Frame = +1
Query: 271 EAALKLFNESIELAPDRAAGYNDRAQLYRLLERDDEALHDLQRALEITEGKKTRARALTL 450
E AL E EL +A ++ A +Y D E+ D+QRA ++ +L
Sbjct: 263 ENALYKIREFSELENAKAMYFD--AYVYETGAFDVES--DIQRAWDLYSSSANLGYTRSL 318
Query: 451 CQQGVLLRKKGSDDEAKKVFEE 516
+ GVLL +G+ +EA + FE+
Sbjct: 319 YRLGVLLEDQGNLEEAVEYFEK 340
>SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 28.3 bits (60), Expect = 1.1
Identities = 23/75 (30%), Positives = 36/75 (48%)
Frame = +1
Query: 223 KELCAKGVKLAEGGQSEAALKLFNESIELAPDRAAGYNDRAQLYRLLERDDEALHDLQRA 402
KE+ + E GQ +L ES E P +NDR + ++ ER EAL +R
Sbjct: 111 KEMFREEDSAVEQGQMNDKQQLLLESSEPTPTIKQQFNDRKKNAQIRER--EAL--AKRE 166
Query: 403 LEITEGKKTRARALT 447
E+ E ++ R + +T
Sbjct: 167 QEMIEDRRQRIKEVT 181
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1
Query: 193 EDSSEIYLKAKELCAKGV 246
ED+SEI K KE+C +GV
Sbjct: 224 EDASEILSKVKEICPEGV 241
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/30 (50%), Positives = 22/30 (73%)
Frame = +1
Query: 142 ATIGDVADDGDTFAEEDEDSSEIYLKAKEL 231
A+ G +A+DGDT + + EDSSE LK +E+
Sbjct: 45 ASTGQLAEDGDT-SSQHEDSSE-ELKRQEV 72
>SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 376
Score = 26.6 bits (56), Expect = 3.5
Identities = 17/65 (26%), Positives = 28/65 (43%)
Frame = +1
Query: 160 ADDGDTFAEEDEDSSEIYLKAKELCAKGVKLAEGGQSEAALKLFNESIELAPDRAAGYND 339
A DGD EEDED+ ++ + +L K L ++ + P + +D
Sbjct: 50 ASDGDCVYEEDEDTRKLEVYVAKLTGKEAALFVTSGTQGNQLCIRSHLH-QPPHSIICDD 108
Query: 340 RAQLY 354
RA +Y
Sbjct: 109 RAHIY 113
>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 413 PKVRRLEPGR*HYVSKEFYSGRKDLT 490
P +R +PG + + FY+GR DLT
Sbjct: 123 PNIRYAKPGE--FSERAFYNGRADLT 146
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 25.4 bits (53), Expect = 8.1
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Frame = +1
Query: 157 VADDGDTFAEEDEDSSEIYLKAKE----LCAKGVKLAEGGQSEAALKLFNESIELAPDRA 324
+ DDGDTF S Y+ A+E L +K G ++ ++F E ++L +
Sbjct: 98 IQDDGDTFRCTIPYSPYFYIAAREGKEALVDDYLKKKFVGLIKSTTRIFKEDLQL-KNHI 156
Query: 325 AGYNDRAQLYRLLERDDEALHDLQ 396
GY +LY L D+ L+DLQ
Sbjct: 157 VGYQ---KLYIKLVFDN--LNDLQ 175
>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 469
Score = 25.4 bits (53), Expect = 8.1
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +1
Query: 163 DDGDTFAEEDEDSSEIYLKAKELCAKGVKLAEGGQSEAALKLFNESIELAPDRAAGYND 339
D GD F + D + E ++K + K ++ L N+ +LAP RAA ND
Sbjct: 178 DSGDLFRKTDPAARESFIKKQ-------KTLNSTRTVNNQPLVNKGEQLAPRRAAELND 229
>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 674
Score = 25.4 bits (53), Expect = 8.1
Identities = 20/81 (24%), Positives = 39/81 (48%)
Frame = +1
Query: 271 EAALKLFNESIELAPDRAAGYNDRAQLYRLLERDDEALHDLQRALEITEGKKTRARALTL 450
+ A K++ E+++L P + + +Y + E QR +++ +KT RAL +
Sbjct: 380 DRARKVYQEALKLIPHKKFTFAKLWLMYAMFELR-------QRKIDVA--RKTLGRALGM 430
Query: 451 CQQGVLLRKKGSDDEAKKVFE 513
C + L R ++A K F+
Sbjct: 431 CPKPKLFRGYIEFEDAIKQFD 451
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,645,438
Number of Sequences: 5004
Number of extensions: 50206
Number of successful extensions: 156
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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