Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19b05
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo...    26   3.8  
SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces po...    26   5.1  
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    26   5.1  
SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr 2...    26   5.1  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    25   6.7  
SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.8  
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    25   8.8  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    25   8.8  

>SPBC1683.09c |frp1||ferric-chelate reductase
           Frp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 564

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -3

Query: 518 RIVEKCQAHLHDKYDRYEVCLHLYKLECDLPVMYKIFFSDLLKIHSNPV 372
           R++ K  AH HD  D+ ++ L  Y L       Y +    +L + + PV
Sbjct: 34  RVIIKSNAHKHDPSDKRQIWLEKYYLFVRQIYTYLVTHKVILTLIAVPV 82


>SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 433

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +2

Query: 95  GHFGDSARNRSDCEL-KRYNHVFDEAGENTHYHSDSDSVASRKSKTRYIN 241
           G F     N S+ ++ K  NHV  +  + T YH+D+  +A       Y+N
Sbjct: 180 GKFKKFVVNHSETDIDKNDNHVSVQTEDGTIYHADTILLAVGAYLNAYLN 229


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 170 GENTHYHSDSDSVASRKSKTRYINPAIYVEKIE 268
           G++T Y    DS+ + KS+  Y+  A+   KIE
Sbjct: 47  GDHTQYAGLRDSLVTYKSENSYVLKALLNAKIE 79


>SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 518

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -2

Query: 405 FRLVEDTLESRPLKNGVELLL*SLCGCGVTSSTQEP 298
           + +V+  L S+  K G+E +  S C CG+ SS  EP
Sbjct: 77  YGVVDPVLASQASKAGLETIFVSGCLCGL-SSVDEP 111


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = +3

Query: 480 LIVKMGLTLFDYPWHLFLRPQLQKKSENVTRKRNRKLFVSGW 605
           LI +  + L+D P H ++  +L+K+    +  +N K+FV+ +
Sbjct: 525 LIDQHPVILYD-PIHEYVNHELRKRENEFSEHKNVKIFVASY 565


>SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 430

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 215 WMQLNRSRYGNEYFRQLRQKHGCIVSIHNLIY 120
           W QLN     +E    L+   GC++ I ++IY
Sbjct: 111 WYQLNLLDISDEDILCLQYLQGCLIPIVSIIY 142


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -2

Query: 249 MAGLMYLVLLFLDATESESLW**VFSPASSKTWLYRFNSQSDLLRALSP 103
           +A L +     + +  S SL+  +   ASS+   +RFN   DLL +L+P
Sbjct: 802 IANLFFQATQVIYSINSTSLYSSIKKEASSR---FRFNLTDDLLHSLNP 847


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +2

Query: 29  FFENFTKPCTYDLLIIIAN 85
           +FE +T  C  D+L++++N
Sbjct: 319 YFEEYTASCISDMLLLVSN 337


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,526,502
Number of Sequences: 5004
Number of extensions: 51850
Number of successful extensions: 151
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)