Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19b05
         (622 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0479 + 14529783-14530613                                         33   0.24 
06_01_0974 + 7541771-7542553,7542666-7542795,7543098-7543645,754...    29   3.9  
01_01_0066 - 513578-513730,513809-513920,514000-514163,514369-51...    28   5.2  
06_03_0372 - 20013078-20013533,20013969-20014062,20014247-20014422     28   6.9  
05_03_0590 - 15884485-15884489,15884702-15884790,15885086-158852...    28   6.9  
03_06_0445 - 33982018-33982965,33984308-33984463                       28   6.9  
07_03_0601 - 19872780-19873099,19873148-19873151,19874196-198743...    27   9.1  

>05_03_0479 + 14529783-14530613
          Length = 276

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 19/62 (30%), Positives = 32/62 (51%)
 Frame = +2

Query: 179 THYHSDSDSVASRKSKTRYINPAIYVEKIEATHSVTSLQTGSCVDDVTPHPHSDYRSNST 358
           T++ SDSD+  S K+K   ++P  +    +   S T+    + V D TP P  + R+N +
Sbjct: 146 TNFPSDSDT-PSAKAKQMKLHPRRHTTPDKTPSSSTAAAAKASVPDPTPAPPEEDRANDS 204

Query: 359 PF 364
            F
Sbjct: 205 SF 206


>06_01_0974 +
           7541771-7542553,7542666-7542795,7543098-7543645,
           7544482-7544864,7546670-7546766
          Length = 646

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +2

Query: 209 ASRKSKTRYINPAIYVEKIEATHSVTSLQTGSCVDDVTPHPHSDYRSNST 358
           A R  K + +  ++    IEA   +  +    C  DV P P S  RS+ST
Sbjct: 256 AKRFDKVKIVRESMN-RMIEAWKEIPDMDEEVCSSDVPPSPQSQTRSSST 304


>01_01_0066 -
           513578-513730,513809-513920,514000-514163,514369-514521,
           514598-514736,514823-514923,514995-515666,515953-516038,
           516112-516777,516874-517128,517231-517358,518645-518799,
           518880-519133,519186-519260,519324-519399,519511-519644,
           519871-520153,520692-520850,520940-521038,521142-521310,
           521423-521653,522002-522114,524179-524310,524389-524469,
           525641-525763
          Length = 1570

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -3

Query: 509 EKCQAHL-HDKYDRYEVCLHLYKLECDLPVMYKIFFSDLLKIH 384
           EK +  L HD Y  +  CLH+Y  E       K   +D+L+ H
Sbjct: 474 EKVKEKLEHDAYQEFLKCLHIYSQEIITRSELKNLVNDILQQH 516


>06_03_0372 - 20013078-20013533,20013969-20014062,20014247-20014422
          Length = 241

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
 Frame = +2

Query: 308 VDDVTPHPHSDYR--SNSTPFLSGR 376
           +D+VT H HS Y+  +N TP + G+
Sbjct: 36  IDEVTTHTHSPYKTHANPTPVIDGQ 60


>05_03_0590 -
           15884485-15884489,15884702-15884790,15885086-15885251,
           15885333-15885393,15886256-15886392,15887936-15888002
          Length = 174

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +2

Query: 197 SDSVASRKSKTRYINPAIYVEKIEATHSVTSLQTGSCVDDV 319
           SD V S+   T     A Y E I AT  VTS + G+ +DD+
Sbjct: 129 SDLVRSKHIDTN--EAASYAESIGATLFVTSAKAGTGIDDI 167


>03_06_0445 - 33982018-33982965,33984308-33984463
          Length = 367

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 272 THSVTSLQTGSCVDDVTPHPHSDYRSNSTPFL 367
           T  + S Q G  +  +T HPHSD +S +T  L
Sbjct: 45  TDVLVSTQVGKRLRYLTKHPHSDIQSMATDLL 76


>07_03_0601 -
           19872780-19873099,19873148-19873151,19874196-19874357,
           19874429-19874617,19874687-19875010,19875103-19875378,
           19875436-19875478,19876110-19876188,19876473-19876555,
           19876708-19876782,19877324-19877490,19877960-19878370
          Length = 710

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 140 KRYNHVFDEAGENTHYHSDSDSVASRKSKTRYIN 241
           ++ N   D   EN+   SD D   + K K RY N
Sbjct: 644 RKRNEEMDAGSENSGSESDRDQRTASKGKKRYFN 677


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,400,403
Number of Sequences: 37544
Number of extensions: 297963
Number of successful extensions: 678
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)