Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19b02
         (560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb...    30   0.27 
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    25   5.8  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    25   5.8  
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni...    25   5.8  

>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 29.9 bits (64), Expect = 0.27
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = -1

Query: 545 STQLSYFIFSYSFQVLFALLVHSVSRFLFFMKDFVPLNVS--FKVILEC 405
           S  + +F+  Y+FQ++  +LV+ + R   F++    LNV    K++L C
Sbjct: 368 SNLIVFFVELYNFQLVSCVLVYDLIR--LFLRSLTELNVEMLLKIVLNC 414


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = +3

Query: 75  ILTCRYKILF 104
           ILTCRYKILF
Sbjct: 3   ILTCRYKILF 12


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = +3

Query: 75  ILTCRYKILF 104
           ILTCRYKILF
Sbjct: 3   ILTCRYKILF 12


>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
           Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +3

Query: 336 SVKYNKPFLIVDSSTVLHKSKWSTFKNYLKRNIQRNKIFHKEKKSRNAVYEQS 494
           SV    P LI+D      K+ ++ FK Y+  N  +     +E+K+R A  + S
Sbjct: 371 SVSEEPPKLIIDIQRERQKAAYAEFKKYIDENGPK---MLEEEKAREAEQKTS 420


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,114,512
Number of Sequences: 5004
Number of extensions: 41522
Number of successful extensions: 131
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)