Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19b02
         (560 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81563-3|CAB04565.1|  222|Caenorhabditis elegans Hypothetical pr...    30   0.99 
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr...    29   3.0  
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int...    29   3.0  
L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family...    29   3.0  
AL132948-31|CAD31831.2|  191|Caenorhabditis elegans Hypothetical...    28   5.3  
AF100657-2|AAC68958.2| 1635|Caenorhabditis elegans Hypothetical ...    28   5.3  
Z83103-3|CAB05473.1|  376|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z81532-2|CAB04324.1|  290|Caenorhabditis elegans Hypothetical pr...    27   7.0  
U80027-19|AAC48129.2|  313|Caenorhabditis elegans F-box a protei...    27   7.0  
Z69646-8|CAA93477.3|  896|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z50794-7|CAA90661.3|  896|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>Z81563-3|CAB04565.1|  222|Caenorhabditis elegans Hypothetical
           protein K04H8.3 protein.
          Length = 222

 Score = 30.3 bits (65), Expect = 0.99
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 240 GSIEQAISL*PYSFYCNSRLHYDCYSYRTLK 148
           G  EQ ++L  Y+F C+S  H DC    TL+
Sbjct: 104 GITEQQLNLRYYNFICSSHFHLDCKLTETLQ 134


>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical protein
            F57F4.4 protein.
          Length = 2090

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +3

Query: 162  TNNNHNV-DASCNKTNTVKEKWPVQLSLCRASTSRGLSHSSGDYDGSENCSVSDRCSCES 338
            T  N NV +A+ N TNT+     + + LCR+S    L+      D    C+     SC S
Sbjct: 1943 TGTNCNVKEAAVNTTNTIPVPTGIPMILCRSSIY--LNGGPVTADSYSACA----GSCAS 1996

Query: 339  VKYNKPF 359
            + Y  P+
Sbjct: 1997 ISYTAPY 2003


>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
            interacting proteinprotein 1 protein.
          Length = 2153

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +3

Query: 162  TNNNHNV-DASCNKTNTVKEKWPVQLSLCRASTSRGLSHSSGDYDGSENCSVSDRCSCES 338
            T  N NV +A+ N TNT+     + + LCR+S    L++ +   D    C+     SC S
Sbjct: 1943 TGTNCNVKEAAVNTTNTIPVPTGIPMILCRSSIY--LNNIALTADAYSVCA----GSCAS 1996

Query: 339  VKYNKPF 359
            + Y  P+
Sbjct: 1997 ISYTGPY 2003


>L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family
            protein 3 protein.
          Length = 3343

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 41/143 (28%), Positives = 68/143 (47%), Gaps = 6/143 (4%)
 Frame = +3

Query: 21   IECFHRKYTINYLHYKINILTCRYKILFNITVL*HENTWTVRTLMSDTNNNHNVDASCNK 200
            +ECF R  T   L Y+I    CR  +LFN  V+   NT T+  + S  N+  N+      
Sbjct: 2771 VECFPR--TEENL-YEIT-KDCR--LLFNSDVI---NT-TIPVVTSPANSTWNLRIINES 2820

Query: 201  TNTVK--EKWPVQLSLC--RASTSRGLSHSSGDYDGSENCSVSDRCSCESVKYNKPFLIV 368
              TVK  E   V L +   ++S  R ++     Y   +   +    + E +KY+  F+IV
Sbjct: 2821 PETVKSLENNAVSLEIITQKSSIPRLITDLRVTYSDMKIYCLGTWQTSEDIKYHITFVIV 2880

Query: 369  D-SSTVLHKSK-WSTFKNYLKRN 431
            D +  V+ +S+   T  ++LK++
Sbjct: 2881 DRNGVVIEESEARQTLTSFLKKH 2903


>AL132948-31|CAD31831.2|  191|Caenorhabditis elegans Hypothetical
           protein Y39B6A.40 protein.
          Length = 191

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +3

Query: 12  CF-QIECFHRKYTINYLHYKINILTCRYKILFNITVL*HENTW 137
           CF ++E + +K  +N+L+  ++  TC Y   F  TVL  +  W
Sbjct: 108 CFIEVEHYKKKEYLNFLYPGVHYCTCPY---FQSTVLQKQTNW 147


>AF100657-2|AAC68958.2| 1635|Caenorhabditis elegans Hypothetical
           protein F52C12.4 protein.
          Length = 1635

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 402 STFKNYLKRNIQRNKIFHKEKKSRNA 479
           +TFKNY K+N + +KI  K   S+ A
Sbjct: 719 TTFKNYNKKNFENSKISPKRGNSKAA 744


>Z83103-3|CAB05473.1|  376|Caenorhabditis elegans Hypothetical
           protein D1025.3 protein.
          Length = 376

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 399 WSTFKNYLKRNIQRNKIFH 455
           W+  K+Y+KRN  R   FH
Sbjct: 272 WNVIKSYIKRNSPRGAFFH 290


>Z81532-2|CAB04324.1|  290|Caenorhabditis elegans Hypothetical
           protein F36F2.2 protein.
          Length = 290

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = +3

Query: 189 SCNKT--NTVKEKWPVQLSLCRASTSRGLSHSSGDYDGSENCSVSDRCSCESVKYNKPFL 362
           SC+K   N V  +   +  L +  T   +     + +GSENC        E+V ++KP L
Sbjct: 48  SCSKATNNDVNREKRSRRKLVKKRTPSEVIEKLEEQEGSENC--------ENVPFDKPLL 99

Query: 363 IVDSSTVL 386
             DS+T++
Sbjct: 100 HSDSATLI 107


>U80027-19|AAC48129.2|  313|Caenorhabditis elegans F-box a protein
           protein 64 protein.
          Length = 313

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 318 DRCSCESVKYNKPFLIVDSSTVLHKSKWSTFKNY 419
           D  S E++K + P  I   + + H ++W T KN+
Sbjct: 173 DDQSLEAIKLSNPSQINQLAQITHLNQWKTAKNF 206


>Z69646-8|CAA93477.3|  896|Caenorhabditis elegans Hypothetical
           protein F59F5.7 protein.
          Length = 896

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -1

Query: 536 LSYFIFSYSFQVLFALLVHSVSRFLFFMKDFVP 438
           L  F  SY+ Q L ++LV+S  RF+ + + ++P
Sbjct: 840 LKKFKISYNVQELASILVYSKKRFVSYSEIYLP 872


>Z50794-7|CAA90661.3|  896|Caenorhabditis elegans Hypothetical
           protein F59F5.7 protein.
          Length = 896

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -1

Query: 536 LSYFIFSYSFQVLFALLVHSVSRFLFFMKDFVP 438
           L  F  SY+ Q L ++LV+S  RF+ + + ++P
Sbjct: 840 LKKFKISYNVQELASILVYSKKRFVSYSEIYLP 872


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,548,447
Number of Sequences: 27780
Number of extensions: 229191
Number of successful extensions: 649
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)