Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19a21
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    32   0.058
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    27   2.9  
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo...    26   3.8  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    26   3.8  
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...    25   6.6  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   6.6  
SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27 |Schizo...    25   8.8  

>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 32.3 bits (70), Expect = 0.058
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -1

Query: 203  PHFYK*SIFYISALNFSYIYHSLQKNLK*NLYENCLNRF 87
            PH  + S FYI++L   ++ H L       +Y NCLN F
Sbjct: 1188 PHDGRISAFYIASLQKYFVKHGLSPYAFSTVYSNCLNPF 1226


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 512 NIAPRFFQVCFNRF 471
           N+ PRF +VCF RF
Sbjct: 771 NVFPRFIKVCFERF 784


>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
           es pombe|chr 2|||Manual
          Length = 372

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
 Frame = +3

Query: 363 PHEQNSWTIHGIWPNKNHSMGPFF---CNKTWSFDPDQVKSIETDLEESWGNIEKEQSLY 533
           P E   WT +G+W  KN    P+      K W   P+     + D  + W +  +E   Y
Sbjct: 307 PWESLDWTFNGLWARKNDL--PYLKAVHGKHW--QPEGSLGYDEDTSKLWWDAFQEMQTY 362


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 305 LAGDYMQNMDGETYALLYYATRAEFMDYSWYMAK*KSLH 421
           L+G  +QN  GE ++LL +     F  Y     + KSLH
Sbjct: 522 LSGTPLQNRIGELFSLLRFLRADPFAYYYCLQCECKSLH 560


>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 161 NFSYIYHSLQKNLK*NLYENCLNR 90
           NF   Y +  KNLK  ++E+  NR
Sbjct: 408 NFKTFYDAFSKNLKLGIHEDAANR 431


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 453 FDPDQVKSIETDLEESWGNIEKEQSLYSLWAHEWTKHGTCAASI 584
           FD D+  S+    ++S+ N+  E+     W H W K G+  A I
Sbjct: 143 FDSDRAVSVSA--KDSFKNLLSEEK----WPHVWLKFGSTIAPI 180


>SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 413

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = +2

Query: 284 FSNIHATLAGDYMQNMDGETYALLYYATRAEFMDYSWYMAK 406
           F+ +   L  D    +D E   +  Y  R    DY+W++ K
Sbjct: 313 FALLEGRLPFDSYPTLDPENVRIKRYVQRLVRCDYTWHLCK 353


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,769,381
Number of Sequences: 5004
Number of extensions: 62768
Number of successful extensions: 185
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)