Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19a17
         (303 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   1.8  
SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2 family|Schizosaccharo...    24   4.3  
SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces pombe...    24   4.3  
SPCC306.06c |||ER membrane protein, BIG1 family |Schizosaccharom...    24   5.6  
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    24   5.6  
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb...    24   5.6  
SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyc...    24   5.6  

>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = -3

Query: 205  SGLGP*PVGRLNLRIGFFRLMRGYLKTQLLHYNYIADSFNTFTPLYNFYL 56
            +G+G   +G L  +  F+R+++   +T   H   +   F T   L + YL
Sbjct: 3811 AGIGKLDIGLLMEKPTFYRILQLLCETSANHSTSLKHEFGTLNTLLSKYL 3860


>SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 342

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 156 NPILKFNRPTGYGPR 200
           +P++  N P GYGPR
Sbjct: 161 DPVVVVNVPAGYGPR 175


>SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 511

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 185 RLWAQTRIYKVIFIIVC*LKKPTSPW 262
           RL A   I ++   I+  LK P+SPW
Sbjct: 416 RLLAAAAIARICTYIMLYLKPPSSPW 441


>SPCC306.06c |||ER membrane protein, BIG1 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 311

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 106 YIADSFNTFTPLYNFYLYIFY 44
           Y+  SFN F PL N  + + Y
Sbjct: 124 YLGGSFNAFPPLQNDRITVVY 144


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 137 APHQPKEPNPQI*PSNRL 190
           AP +P EP+P I P N L
Sbjct: 344 APARPVEPSPSIQPPNLL 361


>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 115 HYNYIADSFNTFTPLYN 65
           +YNY   SF  F P+YN
Sbjct: 456 NYNYPQPSFPPFHPIYN 472


>SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 413

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +2

Query: 80  KSVKAICNIIIMKQLCF*IAPHQPKEPNPQI*PSNRLWAQTRIY 211
           K V AI N++ +K L     PH     N  + P  R+W   R +
Sbjct: 97  KGVHAIVNVLGLKVLDNQPLPHVVNLVNDILPPCIRVWKMARTF 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,202,776
Number of Sequences: 5004
Number of extensions: 22316
Number of successful extensions: 39
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)