Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19a17
         (303 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   2.5  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   4.4  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    20   5.8  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    20   5.8  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 2.5
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +2

Query: 140 PHQPKEPNPQI 172
           PH P+ P PQ+
Sbjct: 467 PHPPETPGPQV 477


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 20.6 bits (41), Expect = 4.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 217 NIYYSLLIKKADITMETKLFVK 282
           N+YYS L  ++   + TK F+K
Sbjct: 265 NLYYSPLSSRSLYYVNTKPFMK 286


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 20.2 bits (40), Expect = 5.8
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 83  SVKAICNIIIMKQLCF*IAPHQPKEP 160
           SV  IC+I+ M  L + + PH    P
Sbjct: 288 SVNLICHILCMSDLHWQL-PHNSTNP 312


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 20.2 bits (40), Expect = 5.8
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = +1

Query: 214 GNIYYSLLIKKADITM 261
           GN  + +++K+ +ITM
Sbjct: 82  GNFDFDMIVKQLEITM 97


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,935
Number of Sequences: 438
Number of extensions: 1645
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6368931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)