Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte19a16
(630 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0348 + 24271764-24271898,24273055-24273144,24273205-242733... 33 0.25
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 32 0.43
10_08_0043 - 14390398-14391531,14391850-14393691,14393800-143968... 31 0.57
10_06_0169 + 11420115-11420163,11420922-11421041,11421938-114220... 29 3.0
07_01_0515 - 3846405-3846449,3846804-3846899,3846980-3847058,384... 29 3.0
02_02_0109 + 6830802-6833412,6833491-6833861 29 3.0
02_02_0106 + 6814391-6817007,6817086-6817462 29 3.0
02_01_0248 + 1637685-1637723,1639036-1639129,1639493-1639637,164... 29 3.0
05_03_0281 + 11560402-11560569,11561373-11561579,11562966-115631... 28 7.0
03_01_0049 + 418957-419040,419599-419796,419918-420040,420172-42... 28 7.0
02_02_0236 + 8135641-8135795,8136167-8136557,8136640-8136931,813... 28 7.0
10_01_0323 + 3530246-3530446,3531091-3531726,3531860-3532018,353... 27 9.3
01_01_0418 - 3142659-3145622 27 9.3
>05_05_0348 +
24271764-24271898,24273055-24273144,24273205-24273303,
24273725-24273826,24273912-24274088,24274193-24274398,
24274491-24274575,24274641-24274798,24274873-24274948,
24275117-24275245,24275313-24275457,24275561-24275691,
24276183-24276335,24276447-24276636,24277006-24277139,
24277248-24277406,24277659-24277964,24278040-24278216,
24278446-24278529,24278592-24278822,24278913-24279002,
24279090-24279211,24279293-24279448,24279477-24279635,
24279705-24279765,24280004-24280138,24280384-24280471,
24280548-24280620,24280883-24280994,24281691-24281711
Length = 1327
Score = 32.7 bits (71), Expect = 0.25
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +2
Query: 329 NTKCDLNGITRNINDISRNLSLMKNNYEDLEIKLSKFSQELPKLEGQMEILEA 487
N + DLN + +N + ++ K Y LE S+F EL K + ++E + A
Sbjct: 779 NAENDLNKLVDQLNRLREKINDAKKGYRALEDAKSRFEMELAKAKKEVESMNA 831
>01_06_0124 -
26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 31.9 bits (69), Expect = 0.43
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = +2
Query: 368 NDISRNL---SLMKNNYEDLEIKLSKFSQELPKLEGQMEILEALANTVE 505
ND+ + L S+M N EDLE+ S +L ++GQ EA+A+T+E
Sbjct: 488 NDLEQELERISIMHKNNEDLELVNSNLQNDLATVQGQKN--EAVASTLE 534
>10_08_0043 -
14390398-14391531,14391850-14393691,14393800-14396825,
14397510-14397609
Length = 2033
Score = 31.5 bits (68), Expect = 0.57
Identities = 15/42 (35%), Positives = 27/42 (64%)
Frame = +2
Query: 359 RNINDISRNLSLMKNNYEDLEIKLSKFSQELPKLEGQMEILE 484
++ D+ SL++ DLE +LSK +L K+EG++++LE
Sbjct: 690 KDATDLKNQQSLVR--ISDLESELSKLQAQLEKIEGKVQMLE 729
>10_06_0169 +
11420115-11420163,11420922-11421041,11421938-11422053,
11422125-11422213,11422413-11422455,11423296-11423440,
11423581-11423688,11423767-11424086,11424255-11424671,
11424776-11425470,11425564-11426107,11426338-11426682,
11426799-11426909
Length = 1033
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +2
Query: 419 EIKLSKFSQELPKLEGQMEILEALANTVETKDFGWNPNSPLLLNAERI 562
E LS S + P GQ++ L A A+ ++ K GW LL +RI
Sbjct: 832 EHALSLLSMK-PSKSGQLDPLHAAASRIQNKYRGWKGRKEFLLFRQRI 878
>07_01_0515 -
3846405-3846449,3846804-3846899,3846980-3847058,
3847144-3847233,3847529-3847626
Length = 135
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 320 HTCNTKCDLNGITRNINDISRNLSLMKNNYEDLEIK 427
HT N T+ IND+ + L +K +ED +I+
Sbjct: 91 HTANQSTPTQAYTQAINDLDKELENLKQAFEDEKIR 126
>02_02_0109 + 6830802-6833412,6833491-6833861
Length = 993
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +2
Query: 404 NYEDLEIKLSKFSQELPKLEGQMEILEALANTVETKDFGWN 526
N+ L+I +KFS +P L G+M++ A AN + + + W+
Sbjct: 459 NFTRLDISNNKFSGPIPTLAGKMKVFIA-ANNLLSGEIPWD 498
>02_02_0106 + 6814391-6817007,6817086-6817462
Length = 997
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +2
Query: 404 NYEDLEIKLSKFSQELPKLEGQMEILEALANTVETKDFGWN 526
N+ L+I ++FS +P L G+M++ A AN + + + W+
Sbjct: 459 NFTRLDISNNRFSGPIPTLAGKMKVFRA-ANNLLSGEIPWD 498
>02_01_0248 +
1637685-1637723,1639036-1639129,1639493-1639637,
1640207-1640317,1640476-1640622,1641097-1641219,
1641391-1641454
Length = 240
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +2
Query: 380 RNLSLMKNNYEDLEIKLSKFSQELPKLEGQMEILEALANTVETK 511
+N+ L+ +E + KL ++LPK+E ++E+ A + E K
Sbjct: 164 KNMGLLLAEFEKINKKLGIRKEDLPKIEEELELEIAKSELTELK 207
>05_03_0281 +
11560402-11560569,11561373-11561579,11562966-11563174,
11563261-11563309,11563611-11563673,11563799-11565472
Length = 789
Score = 27.9 bits (59), Expect = 7.0
Identities = 9/35 (25%), Positives = 21/35 (60%)
Frame = +2
Query: 278 CLLSVIYLMLEYHCHTCNTKCDLNGITRNINDISR 382
C++ + ++M + HC C T+C +T+ + D ++
Sbjct: 29 CVVRLRFVMGDKHCCICKTECSSVFVTKAMGDYTK 63
>03_01_0049 + 418957-419040,419599-419796,419918-420040,420172-420209,
420334-420502,421115-424273,424367-424485,424915-425116
Length = 1363
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = +2
Query: 314 HCHTCNTKCDLNGITRNINDISRNLSLMKNNYEDLEIKLSKFSQELPKLEGQMEI 478
H H K +LN I R+ ++ R + ++ EDL +L + + + G+ +I
Sbjct: 1205 HVHEAELKNELNRIKRSNSEYQRKIQSLEQENEDLTSQLEQMAHIKEEDLGKQDI 1259
>02_02_0236 +
8135641-8135795,8136167-8136557,8136640-8136931,
8137117-8137271,8137363-8137451,8137623-8137967,
8139046-8139169,8139424-8139581,8139673-8139757,
8140094-8140306,8141314-8141375,8141466-8141951,
8142472-8142568
Length = 883
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 269 IMCCLLSVIYLMLEYHCHTCNTK 337
+MC +IYL+L H CNTK
Sbjct: 371 LMCTKPLMIYLLLRLHSKDCNTK 393
>10_01_0323 +
3530246-3530446,3531091-3531726,3531860-3532018,
3532276-3532569,3557747-3557941,3558875-3559095,
3559190-3559373,3559797-3559973,3561319-3561824,
3561880-3562060
Length = 917
Score = 27.5 bits (58), Expect = 9.3
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = -3
Query: 307 QHQIDYA*QTAHDHETIKST*K*PWLSSSCVILICCRVVLGLIAAPTISPSTVHCS 140
QH+ + +T D + + ST PW I R V ++ P+I PS V S
Sbjct: 491 QHRTELLAETNEDTDDVNST---PWSQPKRFIQKPARFVSPVVVGPSIMPSDVSLS 543
>01_01_0418 - 3142659-3145622
Length = 987
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 410 EDLEIKLSKFSQELPKLEGQMEILEALANT 499
E+L + S FSQELP GQ+ L +L T
Sbjct: 328 ENLGVASSDFSQELPSSIGQLRSLNSLEIT 357
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,872,322
Number of Sequences: 37544
Number of extensions: 275102
Number of successful extensions: 774
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -