Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19a12
         (440 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    21   4.5  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   7.9  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    21   7.9  

>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
          protein.
          Length = 134

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -1

Query: 92 RNWYPPAGFEHRCIARYE 39
          RNW  P G ++R   R++
Sbjct: 32 RNWRKPKGIDNRVRRRFK 49


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/23 (30%), Positives = 10/23 (43%)
 Frame = -2

Query: 130 VNREHLLSTYFIREIGTRQRDSN 62
           +    +  TYF+      Q DSN
Sbjct: 10  ITNSSITETYFVSAYNLNQEDSN 32


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +1

Query: 319 P*NYISRCVAHLRCRC 366
           P NY+  C   ++C C
Sbjct: 72  PQNYLGICAEGMQCSC 87


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,276
Number of Sequences: 438
Number of extensions: 3236
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11450997
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)