Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19a06
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    27   2.3  
SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc...    27   3.0  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    27   3.0  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    25   9.1  

>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -1

Query: 623 HIFIRFLWXVLYIYQCIFSYGNVKSNQSVNKY*TRF 516
           HIF+ F +  LYI+  +     + S + +N+  T F
Sbjct: 296 HIFLLFTFECLYIFSLVIDQETLSSFELINQVPTNF 331


>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 555

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 602 WXVLYIYQCIFSYGNVKSNQSVNKY*TRFRGF 507
           W  +Y+ + I   GN K +QS+     R+RGF
Sbjct: 519 WFDIYVKEYIPVIGNTKDHQSLTFLQKRWRGF 550


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +3

Query: 471 LSRHGSGCVIVIKATKTGSIFIYGLIRFNITIAKNTLINVQ 593
           +S+   G V + +   TG  F   +++ +  IAKN +INV+
Sbjct: 595 ISKGAFGSVYLAQKRTTGDYFAIKILKKSNMIAKNQVINVR 635


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = -1

Query: 620 IFIRFLWXVLYI-YQCIFSYGNVKSNQS 540
           +F+ F    L+I YQ  F YG  K N S
Sbjct: 728 VFLTFTGMTLFILYQLTFPYGVAKDNSS 755


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,686,542
Number of Sequences: 5004
Number of extensions: 24601
Number of successful extensions: 61
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)