Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19a01
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.08c |cox12||cytochrome c oxidase subunit VIb|Schizosacc...    30   0.34 
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    29   0.59 
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    26   4.1  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    26   4.1  
SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac...    25   7.2  
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac...    25   9.5  

>SPCC1442.08c |cox12||cytochrome c oxidase subunit
           VIb|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 83

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = -3

Query: 292 LRIFYVLL-VPLLFVSKHCFYNFCDSVRYLGSKRYVHNF-PCQAFAHSVQSI 143
           L I Y+L   P    +KHCF ++ D  R + +K    +F PC+ F H+ QS+
Sbjct: 12  LTISYLLYRFPNTNQTKHCFQSYIDYFRCIKAKG--EDFVPCKQFWHAYQSL 61


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -3

Query: 604 NYFEGLMLRFLFSLYRYRVSNGIFIRKLNFVRCHNILL*RF 482
           NY +   ++F F LY Y V NG+ +  LN  R +   L +F
Sbjct: 817 NYLDLFGIKFAFILYDYFVENGMALELLNSDRFNKSYLKQF 857


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 279 MFYSCLYCSSPNTVSITFATVLDI 208
           M+ S L C   NTVSITF   +D+
Sbjct: 466 MYRSTLVCPVCNTVSITFDPFMDL 489


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 244 HCFYNFCDSVRYLGSKRYVHNFPCQAFAHSVQSIMNV 134
           H F+NF  S  + GSK  + +FP +    S  ++ N+
Sbjct: 199 HEFHNFLPSSIFFGSKPPLGSFPLRGIQSSQFTLSNI 235


>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
           Lac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -1

Query: 606 VITLRV*CCVSYFHYIGIGCQMVYLSEN*ILFVVIIFCCNVSHPVPV*ALFVTF 445
           +ITL +     YFH+  IG  +    +   +++ +  C N  + V V  +FV F
Sbjct: 230 IITLLLIGLSYYFHFTWIGLAVFITMDTSDIWLALSKCLNYVNTVIVYPIFVIF 283


>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 465 KREQDVKRYNRIL*QRTKFSFRINIPFDTLYLYNENKKRNIK 590
           KRE   +   R+L      S+++    D  Y+YNE ++R +K
Sbjct: 158 KREFRGEDAERVLLSPEGSSYKVAPEIDQTYVYNEVRRRLVK 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,796,922
Number of Sequences: 5004
Number of extensions: 60272
Number of successful extensions: 152
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)