Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19a01
         (654 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_05_0040 - 8463585-8464396,8464664-8465273,8465708-8466169           29   3.2  
03_01_0371 + 2883418-2883967,2884097-2884176,2886283-2886339,288...    29   4.3  
03_01_0115 - 915142-915321,915397-915631,916301-916386,916474-91...    27   9.9  

>10_05_0040 - 8463585-8464396,8464664-8465273,8465708-8466169
          Length = 627

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 344 RLGPQENLHER*SVSSTEPPDVRCPPLNEHKTSQNVTKR 460
           ++G Q + H   S+S  + PD+ CPP N H +    T R
Sbjct: 135 KIGGQFDCHAFISIS--QKPDIMCPPQNNHASRVITTTR 171


>03_01_0371 +
           2883418-2883967,2884097-2884176,2886283-2886339,
           2887152-2887207,2888006-2888079,2889511-2889798,
           2890043-2890120,2890359-2890882,2891315-2891438,
           2891619-2891767,2891983-2892137,2892477-2892682,
           2892768-2892901,2892983-2893284,2893514-2893617,
           2893858-2893928
          Length = 983

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = +2

Query: 380 SVSSTEPPDVRCPPLNE 430
           S SST+PP++R PP++E
Sbjct: 610 SASSTQPPNIRPPPISE 626


>03_01_0115 -
           915142-915321,915397-915631,916301-916386,916474-916590,
           917271-917591,918386-918772
          Length = 441

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 175 CQAFAHSVQSIMNVVLTEYEFGEF 104
           C    H VQ  MNV+L   E G+F
Sbjct: 168 CTTSKHIVQMCMNVILVSIELGQF 191


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,320,293
Number of Sequences: 37544
Number of extensions: 361987
Number of successful extensions: 715
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)