Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18p23
         (367 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0345 - 33281126-33281783,33281872-33282063,33282175-332822...    27   3.4  
09_06_0052 - 20510441-20510590,20510692-20511058,20511183-20511664     27   4.5  
05_02_0070 - 6327352-6327582,6327684-6327944                           27   6.0  
08_01_0050 + 350768-351214,352597-352717,352944-353118,353225-35...    26   7.9  

>03_06_0345 -
           33281126-33281783,33281872-33282063,33282175-33282217,
           33282751-33282874,33282966-33283058,33284484-33284685,
           33284751-33284857,33285462-33285543,33285629-33285666,
           33285751-33285837,33286324-33286434,33286554-33286904
          Length = 695

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -1

Query: 337 KSYQYNFPDNNRSILSSPRPVKFAIGTSLFIRSISNRYLPPR 212
           K   Y F D  RSI  + +P K +  +S FI + + R  P R
Sbjct: 392 KRVTYTFDDYERSINEAIKPTKKSENSSEFITTSNRRVHPKR 433


>09_06_0052 - 20510441-20510590,20510692-20511058,20511183-20511664
          Length = 332

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
 Frame = -1

Query: 337 KSYQYNFPDNNRSILSSPRPVKFAIG-----TSLFIRSISNRYLPPRYM 206
           K+     P   R+ L  P P   A+G     TSL IR+I N++L  R M
Sbjct: 118 KAAAIRLPKAFRAALLPPPPPPCALGFTATTTSLMIRNIPNKFLKARLM 166


>05_02_0070 - 6327352-6327582,6327684-6327944
          Length = 163

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = -1

Query: 289 SPRPVKFAIGTSLFIRSISNRYLPPRYMDTMMAPTKSALLS*RECEVKNNIYSYAFR 119
           S R + + +   L  R+ ++R L  RY+DT + P   AL   R+      +   AFR
Sbjct: 39  SSRQLVYDLAVDLSFRN-AHRRLSIRYLDTKLGPADDALPLFRQNPKNTTVLHPAFR 94


>08_01_0050 +
           350768-351214,352597-352717,352944-353118,353225-353295,
           353575-354209
          Length = 482

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -2

Query: 87  FWTIHKIFCRKI 52
           FWT+H ++CR +
Sbjct: 239 FWTVHPVYCRNV 250


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,579,576
Number of Sequences: 37544
Number of extensions: 153579
Number of successful extensions: 289
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)