Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18p19
         (151 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   0.58 
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    19   7.1  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    18   9.4  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 0.58
 Identities = 6/21 (28%), Positives = 14/21 (66%)
 Frame = -3

Query: 68  DFIDNFYIKTKRYXADNHRLR 6
           DF++ ++   +R  ++ HR+R
Sbjct: 71  DFLEQYFSSIRRLNSEAHRIR 91


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -3

Query: 68  DFIDNFYIKTKR 33
           DF+DN+  + KR
Sbjct: 280 DFVDNYAEENKR 291


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = -2

Query: 93  DAFAKFINXFH 61
           DAF   +N FH
Sbjct: 477 DAFIGIVNQFH 487


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,676
Number of Sequences: 438
Number of extensions: 317
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 30
effective length of database: 133,203
effective search space used:  2530857
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)